PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn345181
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 295aa    MW: 32999.7 Da    PI: 8.4584
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn345181genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.11.3e-12521173398
                 -SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  33 sktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 +  l+++d++g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++lv+++++
  Achn345181  52 GLPLKVQDSKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRIE-PEGKLVMGFRK 117
                 44599*************9989999999***9.********************987.77777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.2E-434118IPR003340B3 DNA binding domain
SuperFamilySSF1019361.12E-1042118IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-1842122IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-1142117No hitNo description
PfamPF023623.7E-1053117IPR003340B3 DNA binding domain
PROSITE profilePS508638.6755119IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MKRVAGDSEA RQRLLWSLSA AKKVSGGAIL IEMLCILTVR QAYFPAIYHP EGLPLKVQDS  60
KGKEWMFQFR FWPNNNSRMY VLEGVTPCIQ SMQLQAGDIV TFSRIEPEGK LVMGFRKATT  120
APPSNQGGEN VNACNGVYMN GEVSVKNTKP EVLSSPHQLK GHSALPDISS IDQANSSDPA  180
SIWPKNDKSG NEAKEVLRAK SSFHNKRKTS TLGSKSKRLR IENEDLIELK LTWEQAQGLL  240
RPPANRVPSI VVIDGVEFEE YEVQHFFSVM FELLKNTFRL LPSIENVVEF FDDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C3e-411712126126B3 domain-containing transcription repressor VAL1
5yzz_C3e-411712126126B3 domain-containing transcription repressor VAL1
5z00_C3e-411712126126B3 domain-containing transcription repressor VAL1
5z00_G3e-411712126126B3 domain-containing transcription repressor VAL1
5z00_K3e-411712126126B3 domain-containing transcription repressor VAL1
5z00_M3e-411712126126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028123083.11e-110B3 domain-containing protein Os07g0563300-like
SwissprotQ0D5G43e-65Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2R6PXU51e-125A0A2R6PXU5_ACTCH; B3 domain-containing protein
STRINGVIT_00s0181g00260.t011e-103(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71282126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-63HSI2-like 1