PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn345001
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 383aa    MW: 43407.2 Da    PI: 5.645
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn345001genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.4e-1863110148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++l+d+++++G g+W+t ++  g+ R++k+c++rw +yl
       Achn345001  63 KGPWTPEEDQKLLDYIHKFGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 110
                      79********************************************97 PP
2Myb_DNA-binding52.61e-16116160147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr+T eE++ +++++  lG++ W+ Ia++++ gRt++++k++w+++
       Achn345001 116 RGRFTLEEEQTIIHLHSTLGNK-WSIIAARLP-GRTDNEIKNYWNTH 160
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.3158110IPR017930Myb domain
SuperFamilySSF466891.03E-3160157IPR009057Homeodomain-like
SMARTSM007171.7E-1362112IPR001005SANT/Myb domain
PfamPF002491.5E-1663110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2564117IPR009057Homeodomain-like
CDDcd001671.22E-1265110No hitNo description
PROSITE profilePS5129425.862111165IPR017930Myb domain
SMARTSM007171.0E-15115163IPR001005SANT/Myb domain
PfamPF002493.2E-15116160IPR001005SANT/Myb domain
CDDcd001672.09E-11118161No hitNo description
Gene3DG3DSA:1.10.10.601.3E-26118165IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
METDSIESVE TGGVDAFQFK CDGRMIQINR VVEVVMIFLE RQVRVKIFGN MVRVPCEKNG  60
VKKGPWTPEE DQKLLDYIHK FGYGNWRTLP KNAGLQRCGK SCRLRWTNYL RPDIKRGRFT  120
LEEEQTIIHL HSTLGNKWSI IAARLPGRTD NEIKNYWNTH IKKRLLRMGI DPVTHSPRIY  180
LLNLASILTS SQIYLSTIFD TQPPITNPEL LGLPTSLSPS HREYPYFVPQ NVQENQIFSL  240
QVQNQMPTLV ESYQIQTLNQ EIPICTTMCT PCGPLSSEAQ VMEPNVKQFE SNFTHFNNVI  300
QDYLPLPDYG YYGSDQSTMG LPLCEESNFQ ANHDNNFSFA PVYSTLSSLS STLLDSNSTL  360
INGSTTTITE DGEEEAIAAT TC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-31631657108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028124086.11e-141transcription factor MYB102-like
SwissprotQ9LDR83e-90MY102_ARATH; Transcription factor MYB102
TrEMBLA0A2R6PXS60.0A0A2R6PXS6_ACTCH; Transcription factor like
STRINGVIT_00s0203g00070.t011e-124(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.18e-92MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]