PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn344741

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

HB-other

Protein Properties

Length: 1444aa MW: 163648 Da PI: 5.3059

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn344741	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.5	2e-17	24	79	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t++qle+Le++++ + yp +++r+eL++kl+L++rq + WF+ rR k+kk Achn344741 24 PKRQMKTPYQLEILEKAYALETYPLEATRAELSEKLRLSDRQLQLWFCHRRLKDKK 79 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.9E-18	5	80	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.08E-15	14	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.742	20	80	IPR001356	Homeobox domain
SMART	SM00389	1.6E-16	22	84	IPR001356	Homeobox domain
Pfam	PF00046	4.3E-15	24	79	IPR001356	Homeobox domain
CDD	cd00086	8.90E-13	25	80	No hit	No description
PROSITE pattern	PS00027	0	55	78	IPR017970	Homeobox, conserved site
SMART	SM00571	7.7E-23	532	591	IPR018501	DDT domain
PROSITE profile	PS50827	16.416	532	591	IPR018501	DDT domain
Pfam	PF02791	9.8E-18	533	588	IPR018501	DDT domain
Pfam	PF05066	4.1E-12	714	779	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.3E-10	896	940	IPR028942	WHIM1 domain
Pfam	PF15613	1.0E-13	968	1039	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1444 aa Download sequence Send to blast
MEAGSEGENN KNSDESPIEG PKKPKRQMKT PYQLEILEKA YALETYPLEA TRAELSEKLR 60 LSDRQLQLWF CHRRLKDKKH LGAKKPKDAG GVEKKGLFDP ARDELMAAER GSNHGSKSGS 120 GSGSGSGLGW SRFDERDDVP IVRRYYESPE SVMEQRVIAC VEAQLGEPLR EDGPILGMDF 180 DELPPGAFGE PIGRDRSSDL NDILIYSRIR KLIAATRGHR ECLLDEPENR SDVYERLIPS 240 NFYDQPVECP SASAPLLRHG YGQVSRGYEV QGQASCPSLS THQGKEGLFS SPSGDNNCIS 300 ERESLINMKM NAPDNLQPAG VPDNIDASDR HISNSESGLR MEKKRKSNEA RIGSQVDAQE 360 KRIRKELEKQ DIMRRKREEE QMRREMEKQN RERRKDEERM VREKQRQQER FEREEKRENE 420 RREKFLQKEL LKAERRRQKE ELRREKEEAR LKASIERATT RQIARESMEL IEDERLELME 480 LATSSKGLPS IISLDYDTLQ NLESFRGFLC SFPPKAVQLK RPFSVQPWTD SEENIGNLLM 540 VWRFCITFAD VLGLWPFTLD EFVQAFHDYD SRLLGEIHIS LLKLIIKDIE DVARTPSNGI 600 CTNQCSSANP EGGHPQIVKG AYLWGFDIRN WKNHLNPLTW PEILRQFALS AAFGPQLKKK 660 IIKTAGFPDN DETKACQDII STLRNGSAAE NAVAIMQQKG FPLQRRSRHR LTPGTIKFAA 720 YHVLSLEGSK GMTVIELTHK IQKSGLRGLS TSKTPEASIS VALSRDAVLF ERTAPSTYRV 780 CTPFRKDPTD ADVIFSAARE KIKRYENGFL AGEIVDDVER DEDSEGQGAE GPEIYDLGIP 840 NANRNSNNEN EVGICSRNGT DHFLDDVTLN LQNEPDASDK GPNNPDQGDP EIDEGESGEL 900 WVQGLAEGEY SDLSVEERLK ALVTLVGIGN EGNSIRSVLE QNGYAAERRR LQLKSYVGHK 960 AEEMYTYRSL PLGQDRRLNR YWIFVASASS NDPGSGRIFL ESPDGFWRFI DSEEAFDALL 1020 ESLDTRGIRE SHLHIMLQNI EKSFKETIRK NSQCAIMVDR SGNIGREDAE MDCSPAQSGG 1080 ADSPSSTVSG SHTNTYEPSF SFGIELGKNA TEKKAAMERY QEFQKWMWKE CFNSSTLCAM 1140 KYGEKRCRPL LEICDFCLDS YKVESDLCPS CYRSFGAFDD QITLSEQCED KSKASPRNSL 1200 ISRFSHPLRF RLLRAMLTTI EKLQSTYAFM MNIEDTGKGK HRKEKNSTDL ASMRESYGYR 1260 QKGVFGLVRG RPQKRFIGFG RRNLSMSSIQ VRRQQGQRTH GQRFGRGWQT VRRRIEKSAV 1320 PETLLSHLGN TGGLKILDEL PRTSSGEEEN GGGEEIQQMQ IEEAVKSDAD DHIVEYEYEK 1380 WGTRNAMVMS DEDVDGSEDK NGFKEMREEN FEVDVDMNED SDGNSDGNEN GTADISDSEE 1440 FSD*

Sequence ? help Back to Top

Protein Sequence Length: 1444 aa Download sequence Send to blast

MEAGSEGENN KNSDESPIEG PKKPKRQMKT PYQLEILEKA YALETYPLEA TRAELSEKLR  60
LSDRQLQLWF CHRRLKDKKH LGAKKPKDAG GVEKKGLFDP ARDELMAAER GSNHGSKSGS  120
GSGSGSGLGW SRFDERDDVP IVRRYYESPE SVMEQRVIAC VEAQLGEPLR EDGPILGMDF  180
DELPPGAFGE PIGRDRSSDL NDILIYSRIR KLIAATRGHR ECLLDEPENR SDVYERLIPS  240
NFYDQPVECP SASAPLLRHG YGQVSRGYEV QGQASCPSLS THQGKEGLFS SPSGDNNCIS  300
ERESLINMKM NAPDNLQPAG VPDNIDASDR HISNSESGLR MEKKRKSNEA RIGSQVDAQE  360
KRIRKELEKQ DIMRRKREEE QMRREMEKQN RERRKDEERM VREKQRQQER FEREEKRENE  420
RREKFLQKEL LKAERRRQKE ELRREKEEAR LKASIERATT RQIARESMEL IEDERLELME  480
LATSSKGLPS IISLDYDTLQ NLESFRGFLC SFPPKAVQLK RPFSVQPWTD SEENIGNLLM  540
VWRFCITFAD VLGLWPFTLD EFVQAFHDYD SRLLGEIHIS LLKLIIKDIE DVARTPSNGI  600
CTNQCSSANP EGGHPQIVKG AYLWGFDIRN WKNHLNPLTW PEILRQFALS AAFGPQLKKK  660
IIKTAGFPDN DETKACQDII STLRNGSAAE NAVAIMQQKG FPLQRRSRHR LTPGTIKFAA  720
YHVLSLEGSK GMTVIELTHK IQKSGLRGLS TSKTPEASIS VALSRDAVLF ERTAPSTYRV  780
CTPFRKDPTD ADVIFSAARE KIKRYENGFL AGEIVDDVER DEDSEGQGAE GPEIYDLGIP  840
NANRNSNNEN EVGICSRNGT DHFLDDVTLN LQNEPDASDK GPNNPDQGDP EIDEGESGEL  900
WVQGLAEGEY SDLSVEERLK ALVTLVGIGN EGNSIRSVLE QNGYAAERRR LQLKSYVGHK  960
AEEMYTYRSL PLGQDRRLNR YWIFVASASS NDPGSGRIFL ESPDGFWRFI DSEEAFDALL  1020
ESLDTRGIRE SHLHIMLQNI EKSFKETIRK NSQCAIMVDR SGNIGREDAE MDCSPAQSGG  1080
ADSPSSTVSG SHTNTYEPSF SFGIELGKNA TEKKAAMERY QEFQKWMWKE CFNSSTLCAM  1140
KYGEKRCRPL LEICDFCLDS YKVESDLCPS CYRSFGAFDD QITLSEQCED KSKASPRNSL  1200
ISRFSHPLRF RLLRAMLTTI EKLQSTYAFM MNIEDTGKGK HRKEKNSTDL ASMRESYGYR  1260
QKGVFGLVRG RPQKRFIGFG RRNLSMSSIQ VRRQQGQRTH GQRFGRGWQT VRRRIEKSAV  1320
PETLLSHLGN TGGLKILDEL PRTSSGEEEN GGGEEIQQMQ IEEAVKSDAD DHIVEYEYEK  1380
WGTRNAMVMS DEDVDGSEDK NGFKEMREEN FEVDVDMNED SDGNSDGNEN GTADISDSEE  1440
FSD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028099655.1	0.0	LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A2R6PXX1	0.0	A0A2R6PXX1_ACTCH; Homeobox-DDT domain protein
STRING	Migut.M01107.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	0.0	Homeodomain-like transcriptional regulator