PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn344561
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 309aa    MW: 35259.4 Da    PI: 9.5906
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn344561genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.65.9e-1725114286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 Wtk+ + +L++a  ++  ++++g+l++++W+ev++++     + ++++r+ +qCk++++ l+k+yk++k++ +  +  +sst+p+f++l+
  Achn344561  25 WTKEATATLVDAWGSRYLDVNKGNLRQKDWREVADAVnsrhgHTKKMTRTDTQCKNRIDTLKKKYKAEKARVSASNGAVSSTWPFFSRLD 114
                 **************************************999989999**************************9999***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-2523116No hitNo description
Gene3DG3DSA:1.10.10.607.5E-42588IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGEFTEFSTP QKAPSRPFPV REDFWTKEAT ATLVDAWGSR YLDVNKGNLR QKDWREVADA  60
VNSRHGHTKK MTRTDTQCKN RIDTLKKKYK AEKARVSASN GAVSSTWPFF SRLDNLIGSA  120
KKLPSPPPLA VPLVYRKPRV AQAAVVVLPH KRPFPANDEL YAAADESVKK LLPPMALPLP  180
YRNPPCAMPM PQKRRFPVVD DSYAAEASED LGMGEEDEEE GEGMRRVARA IERFGEMYER  240
VELEKQRQMA ELEKQRMEFT RDLEVQRMQL FMDTQVQLEK MKQPKLAGSV GERSVALELS  300
YFSDRFRC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024974645.14e-97trihelix transcription factor ASIL2-like
RefseqXP_024974646.14e-97trihelix transcription factor ASIL2-like
RefseqXP_024974647.14e-97trihelix transcription factor ASIL2-like
TrEMBLA0A2R6PXZ60.0A0A2R6PXZ6_ACTCH; Trihelix transcription factor
STRINGVIT_10s0003g01300.t017e-96(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.18e-52sequence-specific DNA binding transcription factors