PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn343591

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 878aa MW: 100445 Da PI: 6.0195

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn343591	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	95.1	8.5e-30	96	182	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA++vGFs+r+s ++s+++g+i++r+ vCs+eg+r+e ++ +++r+r+ tr+gCka+++vkk+ gkw vtkl +eHnHel+ Achn343591 96 FYNSYARRVGFSTRVSVYQRSRHDGSIICRQIVCSREGFRREGGEN--RSKRQRTITRVGCKAQMTVKKQVLGKWAVTKLIKEHNHELV 182 9***************************************9998..999**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-26	96	182	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-30	304	395	IPR018289	MULE transposase domain
PROSITE profile	PS50011	11.411	462	869	IPR000719	Protein kinase domain
PROSITE profile	PS50966	10.596	572	620	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.1E-10	594	618	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.0E-9	595	622	IPR006564	Zinc finger, PMZ-type
SMART	SM00220	1.7E-7	667	869	IPR000719	Protein kinase domain
Pfam	PF00069	1.6E-17	780	869	IPR000719	Protein kinase domain
SuperFamily	SSF56112	4.16E-30	781	873	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	2.9E-23	783	874	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 878 aa Download sequence Send to blast
MDFEPLNLEN EVIEFDMGSG DELEEEEEEE EEEEEEEEEE EEEGTQIDLE HADDYEDYND 60 GMFHISSGAH NFNGGDPNLE PYEGMEFDSE QAARIFYNSY ARRVGFSTRV SVYQRSRHDG 120 SIICRQIVCS REGFRREGGE NRSKRQRTIT RVGCKAQMTV KKQVLGKWAV TKLIKEHNHE 180 LVHPDKVHCL RSHRHVSGPA RSLIDTLQAA GMGPSGVMSV LIKESGGINN VGFTKVDCQN 240 YMSSSRQRTL GSGGQHVFDY LKQMQAENPG FYCAVQGDFE NPSGNIFWAD ANSRMNYNYF 300 GDTVTFDTTY RTNRYRVPFA PFTGLNHHGQ PVLFGCALLL NESESSFVWL FQTWLAAMSG 360 RHPISITTDQ DRIIRFAVEQ VFPGTRHRFC KWNVLREAQE KLSYVYLSYP TFEAEFQTCI 420 NVTETVDEFD SCWESILQRY HLGESEWLQS MYNVRHQWVP VYLQDTFFGE MSITKSSDSI 480 NSFFDGYINA STNIHVLIKQ YEKAIASRYE KEVKADYDTI NTAPVLKTPS PMEKQAANLY 540 TRKIFVKFQE ELVETLANPA TVIDDTGAEV MYRVAKFGDD HKAHIIRFDI FGKKARCSCQ 600 MFEFSGILCR HILAVFRVTN VLTLPLHYVL KRWTRSAKSG VVLDNHTLGL PCNYQESSTA 660 RHDNLSREAI KYVEEGAESI HVYDVAMQAL REAAKKVAAA KQNDPDVRKS NVANKSDQKV 720 NISGNRIGQR QSCSVINQDK IIQELTAELE NASQRCEAYR AKLLAVLKNM EEQKLKISVK 780 VQNILTLWYR APEVLLGATH YSTAVDMWSV GCIFAELITK QALFPGDSEL QQLLHIFRFS 840 RKHLLPTKML QYEPSKRISA KKAMEHPYFD DLDKAYL*

Sequence ? help Back to Top

Protein Sequence Length: 878 aa Download sequence Send to blast

MDFEPLNLEN EVIEFDMGSG DELEEEEEEE EEEEEEEEEE EEEGTQIDLE HADDYEDYND  60
GMFHISSGAH NFNGGDPNLE PYEGMEFDSE QAARIFYNSY ARRVGFSTRV SVYQRSRHDG  120
SIICRQIVCS REGFRREGGE NRSKRQRTIT RVGCKAQMTV KKQVLGKWAV TKLIKEHNHE  180
LVHPDKVHCL RSHRHVSGPA RSLIDTLQAA GMGPSGVMSV LIKESGGINN VGFTKVDCQN  240
YMSSSRQRTL GSGGQHVFDY LKQMQAENPG FYCAVQGDFE NPSGNIFWAD ANSRMNYNYF  300
GDTVTFDTTY RTNRYRVPFA PFTGLNHHGQ PVLFGCALLL NESESSFVWL FQTWLAAMSG  360
RHPISITTDQ DRIIRFAVEQ VFPGTRHRFC KWNVLREAQE KLSYVYLSYP TFEAEFQTCI  420
NVTETVDEFD SCWESILQRY HLGESEWLQS MYNVRHQWVP VYLQDTFFGE MSITKSSDSI  480
NSFFDGYINA STNIHVLIKQ YEKAIASRYE KEVKADYDTI NTAPVLKTPS PMEKQAANLY  540
TRKIFVKFQE ELVETLANPA TVIDDTGAEV MYRVAKFGDD HKAHIIRFDI FGKKARCSCQ  600
MFEFSGILCR HILAVFRVTN VLTLPLHYVL KRWTRSAKSG VVLDNHTLGL PCNYQESSTA  660
RHDNLSREAI KYVEEGAESI HVYDVAMQAL REAAKKVAAA KQNDPDVRKS NVANKSDQKV  720
NISGNRIGQR QSCSVINQDK IIQELTAELE NASQRCEAYR AKLLAVLKNM EEQKLKISVK  780
VQNILTLWYR APEVLLGATH YSTAVDMWSV GCIFAELITK QALFPGDSEL QQLLHIFRFS  840
RKHLLPTKML QYEPSKRISA KKAMEHPYFD DLDKAYL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5oo1_A	1e-27	731	874	124	296	Cyclin-dependent kinase 2
5oo3_A	1e-27	731	874	124	296	Cyclin-dependent kinase 2
5osm_A	1e-27	731	874	124	296	Cyclin-dependent kinase 2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028115268.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2R6RMA0	0.0	A0A2R6RMA0_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	VIT_18s0122g00530.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]