PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn343391

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

SBP

Protein Properties

Length: 1071aa MW: 118321 Da PI: 8.0582

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn343391	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.9	3.8e-40	145	222	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+ C++dls+ak+yhrrhkvCevhsk++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Achn343391 145 MCQVDTCREDLSNAKDYHRRHKVCEVHSKSSNALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQT 222 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.0E-33	140	207	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.667	143	220	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.46E-37	144	223	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.3E-29	146	219	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1071 aa Download sequence Send to blast
MEEVGAQVAP PMFMHKNLGG RFHEGHSMTK KRGLPNFHHQ QPRLTAGYGW NTNGWDWDSV 60 RFVAKPLESD VLCLGTARSV QSEQRRTSDG EGSGVPTSLE KKSVVEDDES LRLKLGGSLN 120 SSEEPVSKPN KRVRSGSPGG GSYPMCQVDT CREDLSNAKD YHRRHKVCEV HSKSSNALVG 180 KQMQRFCQQC SRFHPLSEFD EGKRSCRRRL AGHNRRRRKT QTEDVSSRIL LSGNHNNTHN 240 GDLDIVNLLT VLAQTQGHKE VKSTNCSTLP NKDHLIQILS KIKPLPVDIE AKLPAPGSLS 300 KPVPEQASSD NQNRLNANVS SSSTKDLLAV LSATLASPSP NALAILSQRS SQGIDADDTK 360 LACLNQALSL NMQNGAALQF PSVGGARSST SYQSPVEDSD CQVQETRTNL PLQLFSSSPE 420 YDSPPKLACA RKYFSSDSSN AIEDSSPSSS PPVAQKLFPM QTTRETEPKR ISTSRKNAYV 480 ETSKAHGCVT SLELFGLSNR GADNSSFQSL PYQAGYTSSS GSDHSPSSLN SDAQDRTGRM 540 IFKLFGKNPS QLPETLRTQI NNWLSHSPSE MESYIRPGCV ILSIYLSMPY SAWEQLEANL 600 LRHVNSLVRD SDTDFWRNGR FLLQIGRQLA SHKDGEFRLC KSWRAWHSPE LISVSPLAVV 660 GGEETSLFLR GRNLNIPGTK IHWTHMGGYL SEEVPGSASQ ETVYDEISLV SFKIHGVAPG 720 VLGRCFIEVE NGFKGTTFPV IIADATICKE LRLLESAFGE GAKVQDTISE EQIPDFGQPW 780 SKDEVLHFLN ELGWLFQRKR NSSTCDTPNY TLARFKFLFV FSVERNCCAL VKTLLDILLE 840 LDLHRGEPSK ESLDMLSEIH LLNRAVKRRC KNMVDLLIHY PVPSGDSTLK HIFPPNLVGP 900 GGVTPLHLAA CTSSSDDVVD ALTGDPQEIG LHCWNSLLDA NWLSPYAYAL MRNNHSYNSL 960 VARKLADRKN GQVCVSVATE IETQWSGVSQ DHHPRPLIKQ AQRSCSKCAV VASRYNRMMP 1020 VSQGFLHRSY MLSMLAVAAV CVCVCLFLRG HPDVGLVAPF RWENLSYGPS *

Sequence ? help Back to Top

Protein Sequence Length: 1071 aa Download sequence Send to blast

MEEVGAQVAP PMFMHKNLGG RFHEGHSMTK KRGLPNFHHQ QPRLTAGYGW NTNGWDWDSV  60
RFVAKPLESD VLCLGTARSV QSEQRRTSDG EGSGVPTSLE KKSVVEDDES LRLKLGGSLN  120
SSEEPVSKPN KRVRSGSPGG GSYPMCQVDT CREDLSNAKD YHRRHKVCEV HSKSSNALVG  180
KQMQRFCQQC SRFHPLSEFD EGKRSCRRRL AGHNRRRRKT QTEDVSSRIL LSGNHNNTHN  240
GDLDIVNLLT VLAQTQGHKE VKSTNCSTLP NKDHLIQILS KIKPLPVDIE AKLPAPGSLS  300
KPVPEQASSD NQNRLNANVS SSSTKDLLAV LSATLASPSP NALAILSQRS SQGIDADDTK  360
LACLNQALSL NMQNGAALQF PSVGGARSST SYQSPVEDSD CQVQETRTNL PLQLFSSSPE  420
YDSPPKLACA RKYFSSDSSN AIEDSSPSSS PPVAQKLFPM QTTRETEPKR ISTSRKNAYV  480
ETSKAHGCVT SLELFGLSNR GADNSSFQSL PYQAGYTSSS GSDHSPSSLN SDAQDRTGRM  540
IFKLFGKNPS QLPETLRTQI NNWLSHSPSE MESYIRPGCV ILSIYLSMPY SAWEQLEANL  600
LRHVNSLVRD SDTDFWRNGR FLLQIGRQLA SHKDGEFRLC KSWRAWHSPE LISVSPLAVV  660
GGEETSLFLR GRNLNIPGTK IHWTHMGGYL SEEVPGSASQ ETVYDEISLV SFKIHGVAPG  720
VLGRCFIEVE NGFKGTTFPV IIADATICKE LRLLESAFGE GAKVQDTISE EQIPDFGQPW  780
SKDEVLHFLN ELGWLFQRKR NSSTCDTPNY TLARFKFLFV FSVERNCCAL VKTLLDILLE  840
LDLHRGEPSK ESLDMLSEIH LLNRAVKRRC KNMVDLLIHY PVPSGDSTLK HIFPPNLVGP  900
GGVTPLHLAA CTSSSDDVVD ALTGDPQEIG LHCWNSLLDA NWLSPYAYAL MRNNHSYNSL  960
VARKLADRKN GQVCVSVATE IETQWSGVSQ DHHPRPLIKQ AQRSCSKCAV VASRYNRMMP  1020
VSQGFLHRSY MLSMLAVAAV CVCVCLFLRG HPDVGLVAPF RWENLSYGPS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-31	136	219	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	863	868	RAVKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00155	DAP	Transfer from AT1G20980	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028107208.1	0.0	squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A2R6RM85	0.0	A0A2R6RM85_ACTCH; Squamosa promoter-binding-like protein
STRING	VIT_18s0122g00380.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12887	12	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]