PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn342201

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Protein Properties

Length: 737aa MW: 81234.6 Da PI: 6.5496

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn342201	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.6	8e-17	238	330	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f+kvl+ sd+++ grlvlpk +ae e++ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++l+++++ Achn342201 238 FEKVLSASDAGRIGRLVLPKACAEP------EGVPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEGKLLMGFR 328 99******************943......3445***********99899999999.*******************987.8888888887 PP -S CS B3 98 rk 99 ++ Achn342201 329 KA 330 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.3E-24	230	340	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.1E-15	235	329	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.52E-20	236	329	No hit	No description
SMART	SM01019	5.8E-17	238	331	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.983	238	331	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.6E-14	238	330	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence Send to blast
MGALPKELAN QTSNDENPKG LSMSTVNKNS EKQLTSVDKV DGDNVTEMNQ EQLVSSEVRN 60 GLKDLLPSHN DDAHGGQIKE EEVLPHRGEV GNMSSTNFNQ VSIGPSDAAK VAIYKANMGI 120 KDVYESLAQT NLTIALASPS GNSNPFSGAV VEERELGKTI SSFQQVSRSH HLLPKPPKSI 180 LATGLETNAS VGPQMRVARP PAEGRLKNQL LPRYWPRITD QELQLISGDS NSTIVPLFEK 240 VLSASDAGRI GRLVLPKACA EPEGVPLRIQ DVKGKEWVFQ FRFWPNNNSR MYVLEGVTPC 300 IQSMQLQAGD TVTFSRIDPE GKLLMGFRKA SNAIAMQSSA HLNALSKPLN SAGGDFSWHI 360 MEKHVSDTKD GLLLPSMLAP ERKRSRNIGS KSKRFLIDSQ DAMELKLTWE EAQDMLRPPL 420 SEKPSILTIE DHEFEEYEEP PVFAKRSIFT ARSSGCSCSA PDELSPRELE YLLKLNKEFK 480 KQRMLMSHKM VQEHDSATLD ALPNTAVLGD NASDPGGASV ATTTKHPRHR PGCSCIVCIQ 540 PPSGKGKHKP TCTCNVCMTV KRRFKTLMMR KKKRQTEREA EIAQRNHYLW GSKDEAEVDS 600 TITHHDPPAN KGILVNELQL RDQINNLSHK TPEIGKGGLD LNSDPEREEH LHQGSTRVSM 660 MSLLQVASLP LETYLKQNGL TSLISEQQES SGSQSLPQAT TGESEGPVHE DHCVAPVVQE 720 HDSRDDELDN SRNDPS*

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence Send to blast

MGALPKELAN QTSNDENPKG LSMSTVNKNS EKQLTSVDKV DGDNVTEMNQ EQLVSSEVRN  60
GLKDLLPSHN DDAHGGQIKE EEVLPHRGEV GNMSSTNFNQ VSIGPSDAAK VAIYKANMGI  120
KDVYESLAQT NLTIALASPS GNSNPFSGAV VEERELGKTI SSFQQVSRSH HLLPKPPKSI  180
LATGLETNAS VGPQMRVARP PAEGRLKNQL LPRYWPRITD QELQLISGDS NSTIVPLFEK  240
VLSASDAGRI GRLVLPKACA EPEGVPLRIQ DVKGKEWVFQ FRFWPNNNSR MYVLEGVTPC  300
IQSMQLQAGD TVTFSRIDPE GKLLMGFRKA SNAIAMQSSA HLNALSKPLN SAGGDFSWHI  360
MEKHVSDTKD GLLLPSMLAP ERKRSRNIGS KSKRFLIDSQ DAMELKLTWE EAQDMLRPPL  420
SEKPSILTIE DHEFEEYEEP PVFAKRSIFT ARSSGCSCSA PDELSPRELE YLLKLNKEFK  480
KQRMLMSHKM VQEHDSATLD ALPNTAVLGD NASDPGGASV ATTTKHPRHR PGCSCIVCIQ  540
PPSGKGKHKP TCTCNVCMTV KRRFKTLMMR KKKRQTEREA EIAQRNHYLW GSKDEAEVDS  600
TITHHDPPAN KGILVNELQL RDQINNLSHK TPEIGKGGLD LNSDPEREEH LHQGSTRVSM  660
MSLLQVASLP LETYLKQNGL TSLISEQQES SGSQSLPQAT TGESEGPVHE DHCVAPVVQE  720
HDSRDDELDN SRNDPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	9e-62	216	337	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	560	571	KRRFKTLMMRKK
2	560	573	KRRFKTLMMRKKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269\|PubMed:17158584, ECO:0000269\|PubMed:17267611}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028094832.1	0.0	B3 domain-containing transcription repressor VAL2-like isoform X2
Swissprot	Q5CCK4	0.0	VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBL	A0A2R6R8K4	0.0	A0A2R6R8K4_ACTCH; B3 domain-containing transcription repressor like
STRING	VIT_08s0058g01300.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1491	23	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Publications ? help Back to Top
Jia H,McCarty DR,Suzuki M Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression. Plant Physiol., 2013. 163(3): p. 1293-305 [PMID:24043445] Chhun T, et al. HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth. Plant Cell Physiol., 2016. 57(8): p. 1689-706 [PMID:27335347] Yuan W, et al. A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis. Nat. Genet., 2016. 48(12): p. 1527-1534 [PMID:27819666] Li C,Cui Y A DNA element that remembers winter. Nat. Genet., 2016. 48(12): p. 1451-1452 [PMID:27898079]