PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn341111
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 730aa    MW: 82169.5 Da    PI: 5.5715
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn341111genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.13.5e-1001654651303
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+++L++cAeavs+++++ a +l+  l+ ++s  g+p++Rl ay++e+L+ar+++s+s +yk+l+++e +    se ++++++++e++P++kf++  aN
  Achn341111 165 LKQALIACAEAVSDENMSTAGRLMDVLEGMVSVFGEPIERLGAYMLEGLRARMLSSGSVIYKKLKCKEPT---GSELMSYMHVLYEICPYYKFAYNSAN 260
                 5799*****************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                   I ea+++e+r+HiiDf+i qG QW++L++ La+Rp+gpp +RiTgv++++s   +   le +g+rL + A+++gvpfefn  +a +  ++el++Lrv
  Achn341111 261 VVICEAMANESRIHIIDFQIAQGSQWMSLIEFLAKRPGGPPYVRITGVDDSDSAyaRGGGLEIVGQRLLNSAASCGVPFEFNG-AAMSGCEVELDNLRV 358
                 **************************************************988899999************************.89999********** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 ++gEalaVn+ ++lh+++de vs++++rd++L+lvkslsPkvv++ eqe+++n++ Fl rf e+l+yy+a+f+s++a  pr+++er++ E+++++r+iv
  Achn341111 359 RRGEALAVNFPYMLHHMPDEGVSTRNHRDRLLRLVKSLSPKVVTLLEQESNTNTSAFLPRFHETLDYYTAMFESIDAARPRDDKERMSAEQHCVARDIV 457
                 *************************************************************************************************** PP

        GRAS 296 nvvacega 303
                 n++a  ++
  Achn341111 458 NIIAWYTF 465
                 ***97665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.465139535IPR005202Transcription factor GRAS
PfamPF035141.2E-97165465IPR005202Transcription factor GRAS
SuperFamilySSF483713.97E-8558694IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.107.3E-9561631IPR011989Armadillo-like helical
PROSITE profilePS503028.594593628IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503025.164668705IPR001313Pumilio RNA-binding repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MQTSQGQQSS GIIHKLCNQP MQQIETYCFS PFHILNNVSP EKSSQTTQVS FQSGNEQYFT  60
LESSLATDYL VYDSPSSVSI SSNRTPVSPQ GSHSYMSDPN HSSDNTYGSP LSGSSVVDGG  120
SEVRHILRDL EIKLLGPESD IDYNQAYSST CSNQIMKGIP SDLHLKQALI ACAEAVSDEN  180
MSTAGRLMDV LEGMVSVFGE PIERLGAYML EGLRARMLSS GSVIYKKLKC KEPTGSELMS  240
YMHVLYEICP YYKFAYNSAN VVICEAMANE SRIHIIDFQI AQGSQWMSLI EFLAKRPGGP  300
PYVRITGVDD SDSAYARGGG LEIVGQRLLN SAASCGVPFE FNGAAMSGCE VELDNLRVRR  360
GEALAVNFPY MLHHMPDEGV STRNHRDRLL RLVKSLSPKV VTLLEQESNT NTSAFLPRFH  420
ETLDYYTAMF ESIDAARPRD DKERMSAEQH CVARDIVNII AWYTFPSNMH SHQESFTGSM  480
NSINQYMETQ SVLRNPTNVY TRMGYYRLNF NHPRIDQIAS TIHYEFEPTR SDSTYLGNSY  540
YFPNTIGWSS GLWNQQGVRS NLVRRATAED RSKGLERFSQ YQNPDIANMV VEEVSKSIFE  600
LMTDHYGHKL YERLIEGCDN YHLARIVNKL TLQSNALVGA SFYEIWTCLF FSSARTLLSY  660
LNEFLVSTLQ PYLPQLAQTR AGMNVVRKIL VQVSSESLFD PDQFDFDEFV YVTIICLHLL  720
SRCLFFSGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-4817246125304Protein SCARECROW
5b3h_D8e-4817246125304Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028115483.10.0scarecrow-like protein 13
RefseqXP_028115484.10.0scarecrow-like protein 13
RefseqXP_028115485.10.0scarecrow-like protein 13
SwissprotQ9M0M51e-179SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A2R6PXC30.0A0A2R6PXC3_ACTCH; Scarecrow-like protein
STRINGSolyc11g012510.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.11e-162SCARECROW-like 13