PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn340741

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

BBR-BPC

Protein Properties

Length: 421aa MW: 46095.1 Da PI: 9.0341

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn340741	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	311.8	2.3e-95	147	420	12	301
GAGA_bind 12 gyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksids 110 ++y+ +++ + +++++m +iae+da+++e n a++ek+ a+ er++af+qrd a++ r+ a+ erd++++al ++ens++ l g+++ +gtk +++ Achn340741 147 PQYQMNEANAIFMNKRIMHIIAEKDAAVEEMNKAIAEKNVALEERNEAFKQRDDAITARDTAVRERDSAIAALRFQENSMNGIL--GYGIQRGTKRAHQ 243 56665544555699**************************************************************977665..89999**97 PP GAGA_bind 111 lqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslDestl 208 + +++++ e + + +i+++++ ++ k k+++ ++++ k+ kk kk +e+ +++v++++ skae++ +dl +n++++Des++ Achn340741 244 PTNY-------HPAPAAEI-PIASDEIVKSRQAKRA-KGKNNNVSPTVSKS--LKKGKKVGEDLNREVTTNG----SKAEWDAQDLdLINQINFDESSI 327 7662.......22232222.2334444443333222.22222333333333..3455666778888888877....89****889****** PP GAGA_bind 209 PvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +PvCsCtG++rqCYkWGnGGWqS+CCttt+S yPLP+++++r+aR++grKmS+++f++lL +La++G+dls p+DLk++WAkHGtn+++ti+ Achn340741 328 AAPVCSCTGKPRQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARMGGRKMSGSVFTRLLTRLASDGHDLSIPLDLKKFWAKHGTNRYITIK 420 ******************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.0E-113	130	420	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	9.6E-88	139	420	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MIGRVHDVAE LLREAEDAEC GLEELGGAME VGELECLGSD LAVGVGDLGS DAADAGLKDG 60 ERRMSGGRRG RSRLPGRRRQ AGTIFPNLPR LPFETSAYAT SPTPNCFLSP ITKTAPNGYP 120 FPPTQPASPG RGNEEILDVK LQWNTMPQYQ MNEANAIFMN KRIMHIIAEK DAAVEEMNKA 180 IAEKNVALEE RNEAFKQRDD AITARDTAVR ERDSAIAALR FQENSMNGIL GYGIQRGTKR 240 AHQPTNYHPA PAAEIPIASD EIVKSRQAKR AKGKNNNVSP TVSKSLKKGK KVGEDLNREV 300 TTNGSKAEWD AQDLDLINQI NFDESSIAAP VCSCTGKPRQ CYKWGNGGWQ SSCCTTTLSS 360 YPLPQMPNKR HARMGGRKMS GSVFTRLLTR LASDGHDLSI PLDLKKFWAK HGTNRYITIK 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MIGRVHDVAE LLREAEDAEC GLEELGGAME VGELECLGSD LAVGVGDLGS DAADAGLKDG  60
ERRMSGGRRG RSRLPGRRRQ AGTIFPNLPR LPFETSAYAT SPTPNCFLSP ITKTAPNGYP  120
FPPTQPASPG RGNEEILDVK LQWNTMPQYQ MNEANAIFMN KRIMHIIAEK DAAVEEMNKA  180
IAEKNVALEE RNEAFKQRDD AITARDTAVR ERDSAIAALR FQENSMNGIL GYGIQRGTKR  240
AHQPTNYHPA PAAEIPIASD EIVKSRQAKR AKGKNNNVSP TVSKSLKKGK KVGEDLNREV  300
TTNGSKAEWD AQDLDLINQI NFDESSIAAP VCSCTGKPRQ CYKWGNGGWQ SSCCTTTLSS  360
YPLPQMPNKR HARMGGRKMS GSVFTRLLTR LASDGHDLSI PLDLKKFWAK HGTNRYITIK  420
*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028064148.1	1e-146	protein BASIC PENTACYSTEINE5-like
Refseq	XP_028064149.1	1e-146	protein BASIC PENTACYSTEINE5-like
Refseq	XP_028064150.1	1e-146	protein BASIC PENTACYSTEINE5-like
Swissprot	Q8S8C6	2e-99	BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBL	A0A2R6RBR4	0.0	A0A2R6RBR4_ACTCH; Protein BASIC like
STRING	XP_009804621.1	1e-121	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9287	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	6e-97	basic pentacysteine 4