PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn340541
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 172aa    MW: 18984.4 Da    PI: 8.2799
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn340541genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-0920442147
                     TT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqky 47
                     g +W++Ia +++ gRt++++k++w+++
       Achn340541 20 G-RWSLIAGRLP-GRTDNEIKNYWNTH 44
                     3.5*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.325149IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.2E-141462IPR009057Homeodomain-like
SuperFamilySSF466895.69E-91554IPR009057Homeodomain-like
PfamPF002493.5E-72044IPR001005SANT/Myb domain
CDDcd001675.08E-72045No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MATSMWAPLL SRTVPKSCSG RWSLIAGRLP GRTDNEIKNY WNTHIRRKLL NRGIDPATHR  60
VINDPAPEVT TISFATNTKE EEEKITSENR ENNCPDLNLE LKISPPCPNP KPEPFKTGES  120
NSRSSLCFSC SLGIQNSKEC SCTNGTSSSS TGYDFLGLKS GLLDYRSLEM K*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028099008.15e-69myb-related protein 308-like
RefseqXP_028113336.15e-69myb-related protein 308-like
SwissprotP813931e-49MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A2R6RBN51e-103A0A2R6RBN5_ACTCH; Myb-related protein
STRINGEOX976943e-59(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.11e-29myb domain protein 7
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]