PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn340131
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MIKC_MADS
Protein Properties Length: 567aa    MW: 63367.3 Da    PI: 6.6956
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn340131genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.27.8e-27250300151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                 k+i+n + rqvtfskRr g++KKA+ELS+LCdae+a+i+fs tg+l+eyss
  Achn340131 250 KKIDNVTARQVTFSKRRRGLFKKAQELSTLCDAEIALIVFSATGRLFEYSS 300
                 68***********************************************96 PP
2K-box27.61.2e-103562578
       K-box 25 kkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78
                 +e+++  re+R+l Ge+L+ L ++eL++Le+ Le +l ++ ++K ++ ++ ++
  Achn340131  3 SNEVDERTRELRQLRGEELHGLGVEELKKLEKSLEGGLGRVLKTKVNFGVQIVN 56
                5666666799*******************************9999876555444 PP
3K-box34.87.2e-133243991287
       K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                 + +++l+  +a L +e+++  re+R+l Ge+L+ L ++eL++Le+ Le +l ++ ++K+e + ++i  l +k  + 
  Achn340131 324 SLEQQLESSYAMLSNEVDERTRELRQLNGEELHGLGVEELKKLEKSLEGGLGRVLKTKDERFEREITALERKTTRS 399
                 456889999*************************************************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512977.334177IPR002487Transcription factor, K-box
PfamPF014861.9E-7250IPR002487Transcription factor, K-box
PROSITE profilePS5006629.254242302IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-37242301IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-25244264IPR002100Transcription factor, MADS-box
PROSITE patternPS003500244298IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-28244317IPR002100Transcription factor, MADS-box
CDDcd002653.75E-37244310No hitNo description
PfamPF003195.5E-24251298IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-25264279IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-25279300IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.01326432IPR002487Transcription factor, K-box
PfamPF014865.1E-11326397IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MLSNEVDERT RELRQLRGEE LHGLGVEELK KLEKSLEGGL GRVLKTKVNF GVQIVNTSGQ  60
TQEQGQSSES ITNNGGSAAP PQDYDSSDTS LKLGYKQGRI EVQPEPNRFG GFDSGLFPHI  120
PMLLISSQLY VIVTIDSIPN LLYIQPNSNV YAPVRFRSGV DSDFTIRRRL LLSVHRYKFF  180
TTRSGHRRDN DVGKTIEIDI SNGETVEINI DGGKILTVAF SRHEGERVAL QSELTLAMIL  240
RMVRQRIQIK KIDNVTARQV TFSKRRRGLF KKAQELSTLC DAEIALIVFS ATGRLFEYSS  300
SSMNQVIERH DLQENNLVQL NQPSLEQQLE SSYAMLSNEV DERTRELRQL NGEELHGLGV  360
EELKKLEKSL EGGLGRVLKT KDERFEREIT ALERKTTRSR RRFKVFEFGE SDKRVEKVSK  420
KMLGKYGSSD RSPVAKYRFL QCFAQGTKTK QKDIINEIVV IDASDDAIKE AIPVLDVKAP  480
SGSSNYKPAT YHLDSGHSIP ELNFYAARAQ NCGVTLTGSS HVDSTLPQFP SNNEPVTINS  540
DNDDDIELSS SASASDVTEN EGSISI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-18242310169MEF2C
5f28_B4e-18242310169MEF2C
5f28_C4e-18242310169MEF2C
5f28_D4e-18242310169MEF2C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF8382150.0JF838215.1 Actinidia deliciosa SVP4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_010254524.11e-63(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9382377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-45MIKC_MADS family protein