PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn339971
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 453aa    MW: 49171.8 Da    PI: 5.2742
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn339971genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS389.14.9e-119884493374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                  lLl+cAe+v++++l +a+ lL ++sel+sp g++ +R+aayf+ AL+ar+ +s+ ++y+ l+ ++ + +++ +  +al+ ++ +sP++kfsh+taNqa
  Achn339971  88 GLLLQCAECVATDNLDEATDLLPEISELSSPFGSSAERVAAYFADALQARIISSCLGTYSPLNLKTLTLTHTHKICNALQSYNSISPLVKFSHFTANQA 186
                 58************************************************************************************************* PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                 I +a++ge+rvH+iD+di+qGlQWp L++ LasRp++  s+RiTgvgs    s++ le+tg+rLa+fA++lg+pfef++l +k  + +++++L vkpgE
  Achn339971 187 IFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRPRKIRSVRITGVGS----SADLLEATGRRLADFASSLGLPFEFHPLEVKIGNIIDPSQLWVKPGE 281
                 ************************************************....9***************************99999************** PP

        GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                 +++V++++  h l+d ++s       +L+l+  l+Pk++++veq++++ n++sFl rf+eal+yysalfd+l  +l  +s er+ vE++l+g ei+n+v
  Achn339971 282 TTVVHWMH--HCLYDVTGSDLG----TLRLLTLLRPKLITMVEQDLSLsNGGSFLGRFVEALHYYSALFDALGDGLCGDSIERHQVEHQLFGCEIRNIV 374
                 *******9..888888888888....*********************99************************************************** PP

        GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 a  g +r+ + + +e+W + l+++GFkpv+l  + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  Achn339971 375 AVGGPKRTGEVK-VERWGDELGRVGFKPVSLAGNPAAQASLLLGMFPWNGYTLVEENGCLKLGWKDLSLLTASAWQ 449
                 ******998887.9*************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.82760429IPR005202Transcription factor GRAS
PfamPF035141.7E-11688449IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MLHSLVPQSP INSNSNQSPN PISLSSAMRA KRTIDLDNST SEHDDNDSSR KRLNLSGEAS  60
ISGEKMAAAG ENEEALIEGE SSGLRLLGLL LQCAECVATD NLDEATDLLP EISELSSPFG  120
SSAERVAAYF ADALQARIIS SCLGTYSPLN LKTLTLTHTH KICNALQSYN SISPLVKFSH  180
FTANQAIFQA LDGEDRVHVI DLDIMQGLQW PGLFHILASR PRKIRSVRIT GVGSSADLLE  240
ATGRRLADFA SSLGLPFEFH PLEVKIGNII DPSQLWVKPG ETTVVHWMHH CLYDVTGSDL  300
GTLRLLTLLR PKLITMVEQD LSLSNGGSFL GRFVEALHYY SALFDALGDG LCGDSIERHQ  360
VEHQLFGCEI RNIVAVGGPK RTGEVKVERW GDELGRVGFK PVSLAGNPAA QASLLLGMFP  420
WNGYTLVEEN GCLKLGWKDL SLLTASAWQP TD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1629245024379Protein SCARECROW
5b3h_D1e-1629245024379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022759889.10.0LOW QUALITY PROTEIN: scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2R6QCE60.0A0A2R6QCE6_ACTCH; Scarecrow-like protein
STRINGEOX931730.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107452126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-179GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]