PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn339911
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 421aa    MW: 47217.5 Da    PI: 7.5424
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn339911genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS352.85.4e-108374161373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl+cA++ ssg+l++a+a+L ++s las +g++mqRlaa f+ ALa rl++ +++lykal+  e +    se   a+++f +++P+l +++ +  
  Achn339911  37 LIQLLLTCANHTSSGNLHRADACLRQISSLASISGSSMQRLAARFASALAVRLVKRWQGLYKALNRAEPE---NSEMDRARCIFAQAFPYLGLAYAIIT 132
                 689*************************************************************999998...677778999***************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 +++ + +++e+ +HiiD++ + +  W++Ll++L   ++gpp+++iT v++    +k  le++g++L k+Ae++++pf+fn+ v  rl dl+l++L++++
  Achn339911 133 RTLIQTMSEERIIHIIDLGSGDPKLWIPLLRELGHLARGPPHVKITCVNA----NKIVLEKLGKNLFKVAESMDMPFQFNP-VNVRLRDLTLDMLNIRS 226
                 **************************************************....9**************************.799************** PP

        GRAS 199 gEalaVnlvlqlhrll...............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.ee 281
                 gEal + ++l+lh ll               ++sv+  ++  e+L +v s+ Pkvv +veqe+dhn +++++rf+e l+yysa+fds++a+l+  s ee
  Achn339911 227 GEALTITSILSLHVLLaeddrvdphfginknKNSVKDCKQLGEFLAMVHSITPKVVLLVEQESDHNLTRLVDRFVEGLHYYSAVFDSIDATLGGSScEE 325
                 *****************************887778888899*****************************************************999** PP

        GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 ri +E++ +g+ei+++v+ceg er+erhe+++kW  r+ ++GFkpv+l ++ +++ak l + ++ +gy v ++++ l+++W++rp++svSaW
  Achn339911 326 RIAIEEM-FGKEIESIVSCEGLEREERHERYAKWMVRFARVGFKPVRLWYDSMEDAKQLAAAYEPEGYLVVNQRAGLMICWHGRPIYSVSAW 416
                 *******.************************************************************************************ PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.69611397IPR005202Transcription factor GRAS
PfamPF035141.9E-10537416IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MNSSFASTKP DVTLSLTLST SPNALEALKP EERGIKLIQL LLTCANHTSS GNLHRADACL  60
RQISSLASIS GSSMQRLAAR FASALAVRLV KRWQGLYKAL NRAEPENSEM DRARCIFAQA  120
FPYLGLAYAI ITRTLIQTMS EERIIHIIDL GSGDPKLWIP LLRELGHLAR GPPHVKITCV  180
NANKIVLEKL GKNLFKVAES MDMPFQFNPV NVRLRDLTLD MLNIRSGEAL TITSILSLHV  240
LLAEDDRVDP HFGINKNKNS VKDCKQLGEF LAMVHSITPK VVLLVEQESD HNLTRLVDRF  300
VEGLHYYSAV FDSIDATLGG SSCEERIAIE EMFGKEIESI VSCEGLEREE RHERYAKWMV  360
RFARVGFKPV RLWYDSMEDA KQLAAAYEPE GYLVVNQRAG LMICWHGRPI YSVSAWNCFN  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-472941711379Protein SCARECROW
5b3h_A2e-472941710378Protein SCARECROW
5b3h_D2e-472941710378Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028085088.10.0scarecrow-like protein 3
TrEMBLA0A2R6P9S50.0A0A2R6P9S5_ACTCH; Scarecrow-like protein
STRINGEOY037820.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135701216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-104scarecrow-like 3