PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn339911 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GRAS | ||||||||
Protein Properties | Length: 421aa MW: 47217.5 Da PI: 7.5424 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 352.8 | 5.4e-108 | 37 | 416 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lLl+cA++ ssg+l++a+a+L ++s las +g++mqRlaa f+ ALa rl++ +++lykal+ e + se a+++f +++P+l +++ + Achn339911 37 LIQLLLTCANHTSSGNLHRADACLRQISSLASISGSSMQRLAARFASALAVRLVKRWQGLYKALNRAEPE---NSEMDRARCIFAQAFPYLGLAYAIIT 132 689*************************************************************999998...677778999***************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +++ + +++e+ +HiiD++ + + W++Ll++L ++gpp+++iT v++ +k le++g++L k+Ae++++pf+fn+ v rl dl+l++L++++ Achn339911 133 RTLIQTMSEERIIHIIDLGSGDPKLWIPLLRELGHLARGPPHVKITCVNA----NKIVLEKLGKNLFKVAESMDMPFQFNP-VNVRLRDLTLDMLNIRS 226 **************************************************....9**************************.799************** PP GRAS 199 gEalaVnlvlqlhrll...............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.ee 281 gEal + ++l+lh ll ++sv+ ++ e+L +v s+ Pkvv +veqe+dhn +++++rf+e l+yysa+fds++a+l+ s ee Achn339911 227 GEALTITSILSLHVLLaeddrvdphfginknKNSVKDCKQLGEFLAMVHSITPKVVLLVEQESDHNLTRLVDRFVEGLHYYSAVFDSIDATLGGSScEE 325 *****************************887778888899*****************************************************999** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ri +E++ +g+ei+++v+ceg er+erhe+++kW r+ ++GFkpv+l ++ +++ak l + ++ +gy v ++++ l+++W++rp++svSaW Achn339911 326 RIAIEEM-FGKEIESIVSCEGLEREERHERYAKWMVRFARVGFKPVRLWYDSMEDAKQLAAAYEPEGYLVVNQRAGLMICWHGRPIYSVSAW 416 *******.************************************************************************************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 48.696 | 11 | 397 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-105 | 37 | 416 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MNSSFASTKP DVTLSLTLST SPNALEALKP EERGIKLIQL LLTCANHTSS GNLHRADACL 60 RQISSLASIS GSSMQRLAAR FASALAVRLV KRWQGLYKAL NRAEPENSEM DRARCIFAQA 120 FPYLGLAYAI ITRTLIQTMS EERIIHIIDL GSGDPKLWIP LLRELGHLAR GPPHVKITCV 180 NANKIVLEKL GKNLFKVAES MDMPFQFNPV NVRLRDLTLD MLNIRSGEAL TITSILSLHV 240 LLAEDDRVDP HFGINKNKNS VKDCKQLGEF LAMVHSITPK VVLLVEQESD HNLTRLVDRF 300 VEGLHYYSAV FDSIDATLGG SSCEERIAIE EMFGKEIESI VSCEGLEREE RHERYAKWMV 360 RFARVGFKPV RLWYDSMEDA KQLAAAYEPE GYLVVNQRAG LMICWHGRPI YSVSAWNCFN 420 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-47 | 29 | 417 | 11 | 379 | Protein SCARECROW |
5b3h_A | 2e-47 | 29 | 417 | 10 | 378 | Protein SCARECROW |
5b3h_D | 2e-47 | 29 | 417 | 10 | 378 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028085088.1 | 0.0 | scarecrow-like protein 3 | ||||
TrEMBL | A0A2R6P9S5 | 0.0 | A0A2R6P9S5_ACTCH; Scarecrow-like protein | ||||
STRING | EOY03782 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13570 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 1e-104 | scarecrow-like 3 |