PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn339681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | TCP | ||||||||
Protein Properties | Length: 329aa MW: 36636.8 Da PI: 9.873 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 159.3 | 2.1e-49 | 99 | 230 | 2 | 136 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskks 100 agkkdrhski+T++g+RdRRvRls+e+a++fFdLqd+LGfdk+skti+WLl+++k+aik+l++ ++s+ ece+e+++ ++s + k + k+ k+ Achn339681 99 AGKKDRHSKICTARGLRDRRVRLSIEIARKFFDLQDMLGFDKASKTIDWLLTKSKTAIKDLVKMKQSNCGECEEEEEEGEVS--KGMKPLVVEGKKVKQ 195 89**************************************************************777667774444444444..333444444444444 PP TCP 101 qksaasalnlakesrakarararertrekmriknkl 136 q+++ +++ la+esra+arararertrekm++++ + Achn339681 196 QDRD-AFHLLARESRARARARARERTREKMCKRTIN 230 4444.3699999********************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-38 | 100 | 226 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 37.036 | 101 | 159 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.799 | 206 | 223 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MFSSSNSTHA FPLLPPSYHL SPPFFGHGGT DIFLHHHHSH PDLLANDLLA ANSPVIDSIF 60 SMMVSSKATN TNQETSGVLI SGNHSSDPHD SVLIPSKKAG KKDRHSKICT ARGLRDRRVR 120 LSIEIARKFF DLQDMLGFDK ASKTIDWLLT KSKTAIKDLV KMKQSNCGEC EEEEEEGEVS 180 KGMKPLVVEG KKVKQQDRDA FHLLARESRA RARARARERT REKMCKRTIN DPKQPLSSIQ 240 VEACERTREL KNKTLMVGCE GNRVISYSKV CQELLSDIAE ESVVIKRKLK SSSSIFNYQQ 300 NPSNDNFKSV ANLGKPATTT TTVNANMV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 210 | 222 | RARARARERTREK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010660504.1 | 4e-60 | PREDICTED: transcription factor CYCLOIDEA | ||||
TrEMBL | A0A2R6P9X0 | 0.0 | A0A2R6P9X0_ACTCH; Transcription factor CYCLOIDEA like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4333 | 22 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 3e-29 | TCP family protein |