PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn339121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | HB-other | ||||||||
Protein Properties | Length: 183aa MW: 21109.9 Da PI: 10.163 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 37 | 5.6e-12 | 104 | 131 | 27 | 54 |
HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkklgLterqVkvWFqNrRak 54 ++++++LA+kl+L rqV vWFqNrRa+ Achn339121 104 RKQKQDLARKLNLRPRQVEVWFQNRRAR 131 789************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0059 | 87 | 139 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.63E-9 | 102 | 131 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.0E-9 | 104 | 131 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.51E-8 | 104 | 131 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-10 | 104 | 131 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.774 | 104 | 135 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MGSDHDDISN TVLVLGLGFS PTSVQNPSKA DNQRPNNKPQ IFEPSLSLGL CGETYNRNTM 60 VAKESDWLVL YREESGASSF SNASVKRERE MGSEEVEIER VWGRKQKQDL ARKLNLRPRQ 120 VEVWFQNRRA RFVFTTSCDY TLGFILRRKA TKGYTCDNSK KRMHVKESIR TLVSYRLTYR 180 IY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028109134.1 | 1e-40 | homeobox-leucine zipper protein HAT9-like | ||||
TrEMBL | A0A2R6PA67 | 1e-83 | A0A2R6PA67_ACTCH; Homeobox-leucine zipper protein | ||||
STRING | cassava4.1_013986m | 2e-28 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 2e-15 | HD-ZIP family protein |