PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn339111
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HB-other
Protein Properties Length: 240aa    MW: 26944.7 Da    PI: 8.1994
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn339111genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.58.5e-121041312754
                 HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  27 aeereeLAkklgLterqVkvWFqNrRak 54 
                 ++++++LA+kl+L  rqV vWFqNrRa+
  Achn339111 104 RKQKQDLARKLNLRPRQVEVWFQNRRAR 131
                 789************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.005987139IPR001356Homeobox domain
SuperFamilySSF466892.45E-9102131IPR009057Homeodomain-like
CDDcd000861.18E-8104131No hitNo description
Gene3DG3DSA:1.10.10.603.4E-10104131IPR009057Homeodomain-like
PROSITE profilePS5007111.774104135IPR001356Homeobox domain
PfamPF000463.0E-9104131IPR001356Homeobox domain
PfamPF021834.4E-10151185IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.4E-24151194IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGSDHDDISN TVLVLGLGFS PTSVQNPSKA DNQRPNNKPQ IFEPSLSLGL CGETYNRNTM  60
VAKESDWLVL YREESGASSF SNASVKRERE MGSEEVEIER VWGRKQKQDL ARKLNLRPRQ  120
VEVWFQNRRA RFVFTTSCDY TLGFILRTKL KQTEVDCELL KKCCETLTDE NRRLQKEVQD  180
LKALKLAQPL YMATLTMCPS CELIGGGGGR DNTSNSPVLT MAPKTHFLIN PFSNPSTAC*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109134.11e-84homeobox-leucine zipper protein HAT9-like
SwissprotP466048e-51HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2R6PA671e-151A0A2R6PA67_ACTCH; Homeobox-leucine zipper protein
STRINGcassava4.1_013986m1e-75(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-53HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]