PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn337851

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

G2-like

Protein Properties

Length: 299aa MW: 34146.1 Da PI: 8.4658

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn337851	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.3	2.7e-31	66	119	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +F++a+++LGG+e+AtPk + ++m+vkgLt++hvkSHLQ+YR+ Achn337851 66 PRLRWTPDLHLCFLQAIDRLGGQERATPKLVQQVMNVKGLTIAHVKSHLQMYRS 119 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.077	62	122	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-29	62	120	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.09E-14	65	120	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.2E-24	66	121	IPR006447	Myb domain, plants
Pfam	PF00249	3.2E-8	67	118	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MKEIGDIEGS KANPLDMNIE DEEGCDHHDD ENKPKTSASS SNSVADEEEK KAISSGVRQY 60 IRSKLPRLRW TPDLHLCFLQ AIDRLGGQER ATPKLVQQVM NVKGLTIAHV KSHLQMYRSK 120 KIDNQGQVIN GRRYANGRAD GFVDNFWQPF VLHQKLRSYK DVPWIGHENW ISSSCIIDNT 180 KGAFYVDNSK RFYQSQYQHS RQWHGNGGEN VNYFFNNSFI PNTSWSTNGG HKCHTLKRRA 240 EDNDLIDLNL SLSVKKSRQE EAKKTIWDDE VDSNLCLSLF SRAKKQNLAI DLNFPSTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-18	67	121	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-18	67	121	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-18	67	121	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	67	121	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	67	121	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	67	121	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-18	67	121	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-18	67	121	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-18	67	121	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-18	67	121	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-18	67	121	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-18	67	121	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028080454.1	1e-110	two-component response regulator ARR14-like
TrEMBL	A0A2R6PPR4	0.0	A0A2R6PPR4_ACTCH; Myb family transcription factor
STRING	POPTR_0009s07890.1	1e-65	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4382	21	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	3e-42	G2-like family protein