PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn337181
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 473aa    MW: 51473.5 Da    PI: 8.2812
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn337181genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.5e-1659106148
                      TSSS-HH.HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTte.EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+e Ed++++++v ++G+  W++Ia+ ++ gR +kqc++rw+++l
       Achn337181  59 KGGWTPEeEDDKIIELVSKYGPAKWSLIAKSLP-GRIGKQCRERWHNHL 106
                      57799762689**********************.*************97 PP
2Myb_DNA-binding48.52e-15112155146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE++   +a++ +G++ W+ Ia+ +  gRt++ +k++w++
       Achn337181 112 KDAWTLEEELAVMNAHHIYGNK-WAEIAKVLC-GRTDNAIKNHWNS 155
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.2454110IPR017930Myb domain
SuperFamilySSF466895.19E-2856153IPR009057Homeodomain-like
SMARTSM007175.9E-1458108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2561112IPR009057Homeodomain-like
CDDcd001678.26E-1562106No hitNo description
PfamPF139211.6E-1662120No hitNo description
PROSITE profilePS5129420.005111161IPR017930Myb domain
SMARTSM007171.6E-14111159IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-21113161IPR009057Homeodomain-like
CDDcd001672.66E-11114157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MAEVKREEPC LENKQSAAAS SGSVSEGSGS VTLKSPGICS PTATSPSNRR STGPIRRAKG  60
GWTPEEEDDK IIELVSKYGP AKWSLIAKSL PGRIGKQCRE RWHNHLNPDI KKDAWTLEEE  120
LAVMNAHHIY GNKWAEIAKV LCGRTDNAIK NHWNSSLKKK LDFYLATGKL PPVANNCVQS  180
GVTDSSRTAS TGKLLLCSNK GSEPAAQTSS VATDLCKIED DVKEQESSIP VPDMDVSSSV  240
PANESVDSEA VKCNSQSSDI NLRNSYSNIE QKLQSCRANG DIDQEKARGT SLQFESPVYG  300
SLYYEPPQLE SCVQSASYLS NMSFMLQESN YSPHGSPVSF FTPPCVKGDG FRRLSPESIL  360
KRAARSFPNT PSILLRKRKV DAQTPMPSKK IGKDNGEAFQ DRSHTSDEQV HTSNSLENSG  420
LRDESSYGSP GILGNGTTGL CNGKAFNASP PYRLRSKRTA ISKSVEKQLE YI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-45591627109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028077818.10.0transcription factor MYB3R-5 isoform X1
TrEMBLA0A2R6PX090.0A0A2R6PX09_ACTCH; Myb-related protein like
STRINGVIT_08s0007g00360.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54612437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-104myb domain protein 3r-5