PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn336121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | TALE | ||||||||
Protein Properties | Length: 562aa MW: 62273 Da PI: 7.1637 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26 | 1.5e-08 | 480 | 518 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA k gLt +qV++WF N R + Achn336121 480 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 518 5887779******************************88 PP | |||||||
2 | BELL | 79 | 6.4e-26 | 353 | 421 | 3 | 72 |
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 qe+++kk +Ll+ll+eVd++Y+q+ ++++tvis+F+a+++l++ ++++++Al++iS +++L+++i++ i Achn336121 353 QEVEAKKKQLLTLLQEVDEQYNQCLDEIHTVISAFHAATELDP-HIHARFALQTISSLYKSLRERISNEI 421 899****************************************.**********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.9E-24 | 281 | 419 | IPR006563 | POX domain |
Pfam | PF07526 | 4.2E-28 | 287 | 418 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.029 | 459 | 522 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-6 | 462 | 526 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.07E-10 | 462 | 523 | No hit | No description |
SuperFamily | SSF46689 | 2.47E-15 | 464 | 531 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.4E-26 | 465 | 528 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.9E-15 | 479 | 518 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0090470 | Biological Process | shoot organ boundary specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence Send to blast |
MAENDAFNVP TDVANRNAIF MDGLFAHVTS ISPARPNSLN LNNQYHIMGE FPALSMLQGE 60 PTKNLHTGFP ISNHAGLIDC GTSAPSEPLV RNAQERFVGG TPISASSIAA ILAAQCGPRD 120 NMNELPSSTP SANPLEISKN PVLNDYPVAL NSAFTTSVNC GYDGLPGGIN NKWVLDKFLA 180 CPEVTEVPGI TGFQPCQLVG NVSVNANGWT SLDNANLSSD NRSSSSKFSN ELSLSLATSC 240 QPSIIRGTNT TDQCSEISCS GVTSSCNSKK LSLGIGSHGS VQISQFLSGS RYLLVIQEIL 300 TEIASYSLEN LDLMNYPASR NARFSLSSSG YALMGSEGDG RCGAQTDPVL REQEVEAKKK 360 QLLTLLQEVD EQYNQCLDEI HTVISAFHAA TELDPHIHAR FALQTISSLY KSLRERISNE 420 ILKMGGFFNR GDNWEEERSF ETSFIQKQWA LQQLRRKDHQ LWRPQRGLPE RSVSVLRAWM 480 FQNFLHPYPK DAEKHLLAVK SGLTRSQVSN WFINARVRLW KPMIEEMYAE MNRRKGRRNV 540 EETENNHRSQ VSINHRRFNK K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-14 | 468 | 526 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-14 | 468 | 526 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 1e-14 | 468 | 525 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-14 | 468 | 525 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 1e-14 | 468 | 526 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 1e-14 | 468 | 526 | 1 | 59 | Homeobox protein Meis2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028088699.1 | 0.0 | uncharacterized protein LOC114289229 | ||||
Swissprot | P48731 | 1e-106 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | A0A2R6PHE6 | 0.0 | A0A2R6PHE6_ACTCH; Homeobox protein | ||||
STRING | VIT_04s0008g00880.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8261 | 23 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 1e-106 | homeobox gene 1 |
Publications ? help Back to Top | |||
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