PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn335271

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

HB-other

Protein Properties

Length: 1742aa MW: 195607 Da PI: 4.8953

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn335271	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.6	3.7e-17	25	78	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 kR t++qle+Le+ ++ + yps++ r++L+ +lgL++rq ++WF+ rR k++ Achn335271 25 KRKMKTASQLEILEKTYAVETYPSEALRADLSVQLGLSDRQLQMWFCHRRLKDR 78 89999***********************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-16	9	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.48E-14	19	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.839	20	80	IPR001356	Homeobox domain
SMART	SM00389	1.5E-14	22	84	IPR001356	Homeobox domain
CDD	cd00086	5.86E-12	23	80	No hit	No description
Pfam	PF00046	8.4E-15	25	78	IPR001356	Homeobox domain
SMART	SM00571	1.5E-22	527	586	IPR018501	DDT domain
PROSITE profile	PS50827	17.031	527	586	IPR018501	DDT domain
Pfam	PF02791	1.1E-16	529	583	IPR018501	DDT domain
Pfam	PF05066	1.6E-15	709	777	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	4.4E-9	932	976	IPR028942	WHIM1 domain
Pfam	PF15613	3.3E-11	1117	1189	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1742 aa Download sequence Send to blast
MEEGGSGGGS EVEKKKRPEG ENKVKRKMKT ASQLEILEKT YAVETYPSEA LRADLSVQLG 60 LSDRQLQMWF CHRRLKDRNT PPVKRPKKDS TVAAASSSGV GNEKVVGEVG NEHASGSGSG 120 SSPFGHVESQ QQRVALRTGA AIARIATDMP PLKRYYEPPQ AISELRAIAF VEAQLGEPLR 180 EDGPILGMEF DPLPPVSVGQ QKPVTRHFES NLYERTDAKP IKGAVRSLHE YQFLPEQPSV 240 RNDSFERAAP SHYYGSSTDV PSARSALSTG RSYMHGNEQV PPAYGFQGQT PSLSLLPHQG 300 RQSHLLPSTS VEYDTVSQKT SVANIGTDAH FGAHPITALD NPFIPSERQV CTQSEEARLA 360 REVEAHEKRI RKELEKQDIL RRKREEQMKK EMERQDRERR KEEERLLREK QREEVRYQRE 420 QRRELERREK FLQKESIRAE KLRLKEELRR EKEAARQKAA SDRATARRIA KESMELIEDE 480 RLELMELAAS SKGLPSILSL DDKLIVFPPK SVNLKRPFAI KPWCDSEENT GNLFMVWRFL 540 ITFADVLGLW PFTLDEFVQA FHDYDPRLLG EIHIALLRSI IKDIEDVART PSTGLGTNQN 600 CAANPGGGHP QIVQGAYVWG FDIRSWQRHL NPLTWPEILR QFALAAGYGP KLKKRSIEQA 660 YIRDENEGDD GEDIISNLRN GAAAENAVAI MQERGFSNPS RSRHRVTPGT VKFAAFHVLS 720 LEGSDGLTIL EVAERIQKSG LRDLTTSKTP EASIAAALSR DTKLFERTAP STYCVRSPYR 780 RDPADAEAIL SAAREKIQIF KNGYLDGEDA EDVEHDDVER DEDSESDVAE DPEADDLGTE 840 MKPNSETLSC EANRFLTKTY PGDGKEASCD EVMRTPQVGP KNLAGSSPLM QSEGYKGVKS 900 TSTSVDQFID VARISNEADN LDQEDTVIDE SNSGEPWVQG LVEGEYSDLS VEERLSALVA 960 LIGVANEGNS IRVVLEDRLE AANALKKQMW AEVQLDKRRM KEDFVMKMQY SSFMSDKSEP 1020 NIQFSSAEGR QSPLPAVDDK NVLASTNPVI QQEHIQDSQN DTNYCTPIHT ERNQSIQEFS 1080 AGTDNHPLLQ PGFAAERSRS QLKAYIGHKA EEMYVYRSLP LGQDRRRNRY WQFITSASRN 1140 DPGSGRIFVE LRDGCWRLID SEEDFDALLE SLDVRGSKES NLHSMLQKVE VSSKETLRKN 1200 LVHTKTEQLT VDNIKNEVAE MASKPDCSVS TDSPTSTCCV SNSDLPEPSS SFAIGLGRNE 1260 TEKKDAVKRY QDLEKWMWEE CLNSSVLRAI KFGKKRCKQL LDICDYCLDL YLSEDNYCPS 1320 CHRTSETSME DNNFSEHVAQ WRKKFEAEAI QPDWSESYRK SWGTKLHAAL SAEDLLQILT 1380 LLEGAIKKDF VSSNFETTNE LLGYCKRTES AANLSLNPEM IAVLPWIPQT SSAVALRLME 1440 LDASISYMLH QKVDCYKDKG AGDFFALSSK FALAKSIPED DLTEAPHEAE NLLQEPWIDH 1500 GSVRSSSGRG RGGRGRGRGR TRGGRSQRRS ISSRSVAAPR STTTNNERFG QLLGWKGRSR 1560 GRGGRKRSRR TARSRQKPVK RVADIGSERD QQKEIFFDNT VRSLDPQWNR EETMEIQVEA 1620 AENASSSERS EYDDYNGLAA GDEYDDLLPN EYSSVFNGKS DHLIPGVDYN VDGEEDDDDR 1680 VEGDDDVDDE EEDDSEQDEQ VDTDVERYIN SDSDDEGNQD GGEQIGNPDE ATGSTSSDFS 1740 D*

Sequence ? help Back to Top

Protein Sequence Length: 1742 aa Download sequence Send to blast

MEEGGSGGGS EVEKKKRPEG ENKVKRKMKT ASQLEILEKT YAVETYPSEA LRADLSVQLG  60
LSDRQLQMWF CHRRLKDRNT PPVKRPKKDS TVAAASSSGV GNEKVVGEVG NEHASGSGSG  120
SSPFGHVESQ QQRVALRTGA AIARIATDMP PLKRYYEPPQ AISELRAIAF VEAQLGEPLR  180
EDGPILGMEF DPLPPVSVGQ QKPVTRHFES NLYERTDAKP IKGAVRSLHE YQFLPEQPSV  240
RNDSFERAAP SHYYGSSTDV PSARSALSTG RSYMHGNEQV PPAYGFQGQT PSLSLLPHQG  300
RQSHLLPSTS VEYDTVSQKT SVANIGTDAH FGAHPITALD NPFIPSERQV CTQSEEARLA  360
REVEAHEKRI RKELEKQDIL RRKREEQMKK EMERQDRERR KEEERLLREK QREEVRYQRE  420
QRRELERREK FLQKESIRAE KLRLKEELRR EKEAARQKAA SDRATARRIA KESMELIEDE  480
RLELMELAAS SKGLPSILSL DDKLIVFPPK SVNLKRPFAI KPWCDSEENT GNLFMVWRFL  540
ITFADVLGLW PFTLDEFVQA FHDYDPRLLG EIHIALLRSI IKDIEDVART PSTGLGTNQN  600
CAANPGGGHP QIVQGAYVWG FDIRSWQRHL NPLTWPEILR QFALAAGYGP KLKKRSIEQA  660
YIRDENEGDD GEDIISNLRN GAAAENAVAI MQERGFSNPS RSRHRVTPGT VKFAAFHVLS  720
LEGSDGLTIL EVAERIQKSG LRDLTTSKTP EASIAAALSR DTKLFERTAP STYCVRSPYR  780
RDPADAEAIL SAAREKIQIF KNGYLDGEDA EDVEHDDVER DEDSESDVAE DPEADDLGTE  840
MKPNSETLSC EANRFLTKTY PGDGKEASCD EVMRTPQVGP KNLAGSSPLM QSEGYKGVKS  900
TSTSVDQFID VARISNEADN LDQEDTVIDE SNSGEPWVQG LVEGEYSDLS VEERLSALVA  960
LIGVANEGNS IRVVLEDRLE AANALKKQMW AEVQLDKRRM KEDFVMKMQY SSFMSDKSEP  1020
NIQFSSAEGR QSPLPAVDDK NVLASTNPVI QQEHIQDSQN DTNYCTPIHT ERNQSIQEFS  1080
AGTDNHPLLQ PGFAAERSRS QLKAYIGHKA EEMYVYRSLP LGQDRRRNRY WQFITSASRN  1140
DPGSGRIFVE LRDGCWRLID SEEDFDALLE SLDVRGSKES NLHSMLQKVE VSSKETLRKN  1200
LVHTKTEQLT VDNIKNEVAE MASKPDCSVS TDSPTSTCCV SNSDLPEPSS SFAIGLGRNE  1260
TEKKDAVKRY QDLEKWMWEE CLNSSVLRAI KFGKKRCKQL LDICDYCLDL YLSEDNYCPS  1320
CHRTSETSME DNNFSEHVAQ WRKKFEAEAI QPDWSESYRK SWGTKLHAAL SAEDLLQILT  1380
LLEGAIKKDF VSSNFETTNE LLGYCKRTES AANLSLNPEM IAVLPWIPQT SSAVALRLME  1440
LDASISYMLH QKVDCYKDKG AGDFFALSSK FALAKSIPED DLTEAPHEAE NLLQEPWIDH  1500
GSVRSSSGRG RGGRGRGRGR TRGGRSQRRS ISSRSVAAPR STTTNNERFG QLLGWKGRSR  1560
GRGGRKRSRR TARSRQKPVK RVADIGSERD QQKEIFFDNT VRSLDPQWNR EETMEIQVEA  1620
AENASSSERS EYDDYNGLAA GDEYDDLLPN EYSSVFNGKS DHLIPGVDYN VDGEEDDDDR  1680
VEGDDDVDDE EEDDSEQDEQ VDTDVERYIN SDSDDEGNQD GGEQIGNPDE ATGSTSSDFS  1740
D*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1510	1518	RGGRGRGRG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028121397.1	0.0	homeobox-DDT domain protein RLT2 isoform X2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2R6QC16	0.0	A0A2R6QC16_ACTCH; Homeobox-DDT domain protein
STRING	POPTR_0017s04760.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	0.0	Homeodomain-like transcriptional regulator