PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn334481
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 191aa    MW: 21405.1 Da    PI: 10.1539
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn334481genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.4e-2068118255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrd +    + +r++lg+f taeeAa+a+++a+ +++g
  Achn334481  68 KYRGVRRRP-WGKFAAEIRDSTR---QgARVWLGTFNTAEEAARAYDRAAYAMRG 118
                 8********.**********322...24*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-1568118IPR001471AP2/ERF domain
CDDcd000185.37E-2068127No hitNo description
PROSITE profilePS5103223.78868126IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2368127IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-3168128IPR001471AP2/ERF domain
SMARTSM003801.8E-3568132IPR001471AP2/ERF domain
PRINTSPR003671.4E-116980IPR001471AP2/ERF domain
PRINTSPR003671.4E-1192108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MFLLQPPTYF LGPPIGGLVP RVRFVPKRSP ITKNRKSVSK ATTLTSQPPM EGDSRGKVKD  60
EKGGDEVKYR GVRRRPWGKF AAEIRDSTRQ GARVWLGTFN TAEEAARAYD RAAYAMRGQL  120
AILNFPEEYN LQTSSSSNNM SSSSSSSSSV ILENTGERNE DQRQVIEIEY LDNKLLEELL  180
DSEEKKNKKK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-38631909129Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039174.16e-50PREDICTED: ethylene-responsive transcription factor ERF096
SwissprotQ9LTC51e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2R6RUR24e-97A0A2R6RUR2_ACTCH; Ethylene-responsive transcription factor
STRINGXP_010039174.12e-49(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.15e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]