PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn333501
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 211aa    MW: 23053.8 Da    PI: 8.6465
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn333501genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-192272256
         AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                +++GVr ++ +g+++AeIrd ++    ++r++lg+f++ae+Aa+a++aa+++l+g+
  Achn333501 22 RFRGVRKRP-WGKFAAEIRDpWK----KARVWLGTFDSAEDAARAYDAAARNLRGA 72
                69*******.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.46E-172281No hitNo description
SMARTSM003803.0E-342285IPR001471AP2/ERF domain
PROSITE profilePS5103223.2092279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-312280IPR001471AP2/ERF domain
PfamPF008472.7E-122271IPR001471AP2/ERF domain
PRINTSPR003671.9E-102334IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-222381IPR016177DNA-binding domain
PRINTSPR003671.9E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGRARAMAAG EADGSGPAKE VRFRGVRKRP WGKFAAEIRD PWKKARVWLG TFDSAEDAAR  60
AYDAAARNLR GAKAKTNFPL SSILAPLAPH SPFDQKPHDP FIERHLYPPH HQIIPQRPTS  120
SSLSSTVESF SGPKPPRPAV APPSSFRRRP RTPPVSPDDC RSDCDSSSSV VDDGDCDIAS  180
SSFRKALDFD LNLTPTLDEA DDLYCTDLRL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-221880164ATERF1
3gcc_A9e-221880164ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8698600.0GQ869860.1 Actinidia deliciosa ethylene response factor 9 (ERF9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346195.13e-70PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotO803393e-53ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLD8VD361e-149D8VD36_ACTDE; Ethylene response factor 9
STRINGPGSC0003DMT4000574431e-69(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33302347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.15e-28ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]