PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn332821
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 618aa    MW: 69090.9 Da    PI: 6.3302
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn332821genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.35.1e-1372476171374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+e L++cA+av+++dl  +++l+++l++++s +gdp+qRl ay++e+L arla+s+s +ykal+++e +    +e l+++++++ev+P++kf+++ aN
  Achn332821 247 LKEMLIACAKAVDDNDLLTVEWLMSELRQMVSVSGDPIQRLGAYMLEGLVARLASSGSAIYKALKCKEPA---GAELLSYMHILYEVCPYFKFGYMSAN 342
                 5789*****************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI e ++ e+r+HiiDf+isqG+QW++L+qaLa+Rp+gpp++ iTg++++ s   +   l+ +g+rL++fAe+++vpfef++ v  + ++le+++L v
  Achn332821 343 GAIAEVMKDEDRIHIIDFQISQGIQWVTLIQALAARPGGPPQICITGIDDSMSAyaRGGGLHIVGQRLTRFAESCKVPFEFHA-VPISASMLEVQDLGV 440
                 **************************************************888789999************************.68899********** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgE ++Vn+ + lh+++desvs+e++rd++L++vkslsPk+v++veqe+++n+++Fl rfle+l+yy a+f+s++a+lpre++eri+vE+++l+ eiv
  Achn332821 441 HPGEPVVVNFPFVLHHMPDESVSIENHRDRLLRMVKSLSPKIVTLVEQESNTNTTPFLPRFLETLNYYLAIFESIDATLPREHKERINVEQHCLAGEIV 539
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n++acegaer+erhe l+kWr+r+++aGF p+pl++++++++k+ll++++++ y++ee++g+l+lgW+++ +v+ +aW+
  Achn332821 540 NIIACEGAERVERHELLGKWRSRFHMAGFVPYPLNSRVNATIKTLLENYSNN-YTLEERDGTLYLGWMNKDIVVSCAWK 617
                 **************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.871221598IPR005202Transcription factor GRAS
PfamPF035141.8E-134247617IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MTTANKIIIV TNRLAFVLPK NKNWIVGLIA KPVWAQRPRF GSIFSSDTGW INARRPHLRI  60
LFGLATKAEQ ENPMRKESQK QGNAGGSRRL YYQHAQELES YTWPPSQTLD HNLCSNNGNQ  120
VTHFSSDQLC TLETSTAASG CPLQNSPSAL SFSAHGSPVS QPDSQSYASD TLHSPDSTFI  180
SAVSGICLTD DDNEMRYKLR ELETVMLGPD SNMLEARDIS ILGGPNQIPS EPENWKQMTE  240
MIRRRDLKEM LIACAKAVDD NDLLTVEWLM SELRQMVSVS GDPIQRLGAY MLEGLVARLA  300
SSGSAIYKAL KCKEPAGAEL LSYMHILYEV CPYFKFGYMS ANGAIAEVMK DEDRIHIIDF  360
QISQGIQWVT LIQALAARPG GPPQICITGI DDSMSAYARG GGLHIVGQRL TRFAESCKVP  420
FEFHAVPISA SMLEVQDLGV HPGEPVVVNF PFVLHHMPDE SVSIENHRDR LLRMVKSLSP  480
KIVTLVEQES NTNTTPFLPR FLETLNYYLA IFESIDATLP REHKERINVE QHCLAGEIVN  540
IIACEGAERV ERHELLGKWR SRFHMAGFVP YPLNSRVNAT IKTLLENYSN NYTLEERDGT  600
LYLGWMNKDI VVSCAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6025461625377Protein SCARECROW
5b3h_D2e-6025461625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028103272.10.0scarecrow-like transcription factor PAT1
RefseqXP_028103273.10.0scarecrow-like transcription factor PAT1
RefseqXP_028103274.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2R6PT860.0A0A2R6PT86_ACTCH; Scarecrow-like transcription factor
STRINGVIT_12s0057g00560.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]