PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn332691

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

HB-PHD

Protein Properties

Length: 954aa MW: 106582 Da PI: 4.9196

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn332691	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.4	1.8e-11	795	842	9	56
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++ L F++n+yp ++++e LAk+lg+ qV+ WF N R + Achn332691 795 EAATQGLLISFKENQYPERAMKENLAKELGIAVHQVSKWFENARWSFR 842 5667778889**********************************8766 PP
2	PHD	38.1	3.4e-13	427	482	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg ++++++lCdg C+++fH+ Cl+++l ++++p + wlC+ C++k Achn332691 427 FCAKCGTkdLRADNDIILCDGaCERAFHQFCLEPPLLKQDIPPDdeGWLCPGCDCK 482 69999977777*****66**************999999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	8.2E-13	421	485	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	1.8E-12	425	482	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	10.985	425	482	IPR019787	Zinc finger, PHD-finger
CDD	cd15504	3.55E-26	427	479	No hit	No description
SMART	SM00249	1.2E-9	427	480	IPR001965	Zinc finger, PHD-type
Pfam	PF00628	1.4E-10	427	482	IPR019787	Zinc finger, PHD-finger
PROSITE pattern	PS01359	0	428	479	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:1.10.10.60	7.8E-12	775	838	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.2E-10	784	846	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.471	784	844	IPR001356	Homeobox domain
SMART	SM00389	1.8E-11	786	848	IPR001356	Homeobox domain
CDD	cd00086	7.28E-10	787	844	No hit	No description
Pfam	PF00046	5.6E-9	795	842	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 954 aa Download sequence Send to blast
MSDDINMDAT SAQLNCETRQ LSPPTQKTLI REHEFGSRSL ASEAAEEKDT VSTENVNKGS 60 IEASAVECIY NGIEQLRSHQ EDLTSNSSCE QLGKQLEEAT MNSNSEKLWL LTEHTDGKNL 120 NAKQVMSEIN YELAPDSSNT EALVEKQKED HAQNGRAETG TREIGCLGLE PSELPSEDIT 180 KNSSWEQLKP PPGDKRESSL EQLGVPPKDV GVTTSLVQLK PLPDNASKDC DGQFELPLED 240 AANNPIKSGG GGTRTSTKST KGKHALRSSA GSTRVLRSRS QEKHKAPEPS NNLPEHGDDP 300 NGEKRRKKKK PNRIKKTPAD EFSRVRKHLR YLLHRIKYEQ NLIDAYSAEG WKGQSLEKIK 360 PEKELQRAKS EIFRCKLKIR DLFQRLDLSI AEGKLPRSLF DSEGQIDMYI SSSEWQIPVF 420 IFSWQIFCAK CGTKDLRADN DIILCDGACE RAFHQFCLEP PLLKQDIPPD DEGWLCPGCD 480 CKVDCIDLLN DSQGTNLSVL DKWERVFPEE AAASAAGKML DDNLGLPSDD SEDNDYNPDG 540 SEVDVKVEGN ESSSDESDFY SASEDIGASP ISKQNLEQSS DDSEDDDYDP SAPDLDEQVK 600 EESSSSDFTS DPEDFSVAFD DHRSPLENES VPDEPMCVSS DHTMPDRGSN VEISKVGRRK 660 KQTINDELLS LLETGTDRGE FAPVSGRRHV ERLDYKQLYD ETYGNVSSDS SDENWVDATD 720 GPKKRRKHYI EMEGSNAEDM DTDQEESEHT PKRRVRKKLD VEGTNSKSSK SYKASLEHGS 780 SGSIAKRSTY RRLGEAATQG LLISFKENQY PERAMKENLA KELGIAVHQV SKWFENARWS 840 FRHSAHMKAL VENAPSRGTP PQTNPSVPGP KMVTEDVHNE ESSKRRYTSP RARKKSCQSE 900 HQAPYHVLGN EETQKLNAPV DLQNTEEVLE KGRPKKAQEK QRRGRPKSRK SAA*

Sequence ? help Back to Top

Protein Sequence Length: 954 aa Download sequence Send to blast

MSDDINMDAT SAQLNCETRQ LSPPTQKTLI REHEFGSRSL ASEAAEEKDT VSTENVNKGS  60
IEASAVECIY NGIEQLRSHQ EDLTSNSSCE QLGKQLEEAT MNSNSEKLWL LTEHTDGKNL  120
NAKQVMSEIN YELAPDSSNT EALVEKQKED HAQNGRAETG TREIGCLGLE PSELPSEDIT  180
KNSSWEQLKP PPGDKRESSL EQLGVPPKDV GVTTSLVQLK PLPDNASKDC DGQFELPLED  240
AANNPIKSGG GGTRTSTKST KGKHALRSSA GSTRVLRSRS QEKHKAPEPS NNLPEHGDDP  300
NGEKRRKKKK PNRIKKTPAD EFSRVRKHLR YLLHRIKYEQ NLIDAYSAEG WKGQSLEKIK  360
PEKELQRAKS EIFRCKLKIR DLFQRLDLSI AEGKLPRSLF DSEGQIDMYI SSSEWQIPVF  420
IFSWQIFCAK CGTKDLRADN DIILCDGACE RAFHQFCLEP PLLKQDIPPD DEGWLCPGCD  480
CKVDCIDLLN DSQGTNLSVL DKWERVFPEE AAASAAGKML DDNLGLPSDD SEDNDYNPDG  540
SEVDVKVEGN ESSSDESDFY SASEDIGASP ISKQNLEQSS DDSEDDDYDP SAPDLDEQVK  600
EESSSSDFTS DPEDFSVAFD DHRSPLENES VPDEPMCVSS DHTMPDRGSN VEISKVGRRK  660
KQTINDELLS LLETGTDRGE FAPVSGRRHV ERLDYKQLYD ETYGNVSSDS SDENWVDATD  720
GPKKRRKHYI EMEGSNAEDM DTDQEESEHT PKRRVRKKLD VEGTNSKSSK SYKASLEHGS  780
SGSIAKRSTY RRLGEAATQG LLISFKENQY PERAMKENLA KELGIAVHQV SKWFENARWS  840
FRHSAHMKAL VENAPSRGTP PQTNPSVPGP KMVTEDVHNE ESSKRRYTSP RARKKSCQSE  900
HQAPYHVLGN EETQKLNAPV DLQNTEEVLE KGRPKKAQEK QRRGRPKSRK SAA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	302	310	EKRRKKKKP
2	303	309	KRRKKKK
3	304	310	RRKKKKP
4	722	726	KKRRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028118478.1	0.0	pathogenesis-related homeodomain protein-like
TrEMBL	A0A2R6RGY4	0.0	A0A2R6RGY4_ACTCH; Pathogenesis-related homeodomain protein
STRING	VIT_03s0091g00290.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7220	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	1e-114	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain