PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn331991
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 624aa    MW: 69235.1 Da    PI: 4.8935
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn331991genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS402.63.9e-1232416062373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++ L++c+eav s++   +++++a+l +lasp+g+p+ Rl+ayfteALa r++r +++++++  p+e ++   ++  ++l+l+++vsPi+kf h+  N+
  Achn331991 241 ISFLMACVEAVGSNNIVGINHFIAKLGDLASPRGSPISRLIAYFTEALALRVTRVWPNTFHITIPRELDP-VDDDGGTSLRLLNQVSPIPKFIHFSSNE 338
                 678***********************************************************99999986.4566678889****************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                  Il+a+eg++rvHiiDfd++qGlQWp+L+q+LasRp++p+++RiTg+g+    sk+ l etg+rL+ fA +l++pf+f++ v+++led++l++L+vk++
  Achn331991 339 IILKAFEGKDRVHIIDFDVKQGLQWPSLFQSLASRPNPPAHVRITGIGE----SKQDLIETGDRLTGFAGALNLPFQFHP-VVDKLEDVRLWMLHVKER 432
                 *************************************************....9**************************.7***************** PP

        GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                 E++aVn+v+qlh++l++   ++   +++L l++s++P +v v+eqea+hn++ +  r++ +l+yysa+fds++  lpr+s +rik+E+  ++rei+nv+
  Achn331991 433 ETVAVNCVFQLHKTLHDGSGVAF--RDFLGLIRSTNPVIVLVAEQEAEHNEPFLESRVSYTLKYYSAIFDSIDLCLPRDSTARIKIEEN-FAREIRNVI 528
                 ***************77666666..99**************************************************************.********* PP

        GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373
                 aceg+ r+erhe+++kWre +e  G++ + ++e++  q ++ll++++ + ++ve   ++ + l+l W d+pL+++SaW
  Achn331991 529 ACEGSGRIERHERFGKWRELMELGGYRCLGIDERELIQTQMLLKMHNCENFSVEmqgQDWAGLTLSWLDQPLFTISAW 606
                 ***********************************************999****7666678899************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.048214584IPR005202Transcription factor GRAS
PfamPF035141.3E-120241606IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MSTQRLDLPC SFARKDTTRS QPVKPLDPMP NGCSLKQNIR LPPLATTSET ARREIKDEFW  60
EKGKSLKRFA EKSSFNDDDD DGSFIYRSKR KRSIEKSDET AETSDDSGLG QLGIGSFWLN  120
TAQFSLSLSC SGEEGEDRAC FMPGDLISPP LPIPNAPWAD SVVTVITKFG DKNLGPSHWP  180
VSEASGPSTS SETHQILATN LNPNPSGPES GNVGGLYNPI EVTELGAEDS SNEEEEGFEL  240
ISFLMACVEA VGSNNIVGIN HFIAKLGDLA SPRGSPISRL IAYFTEALAL RVTRVWPNTF  300
HITIPRELDP VDDDGGTSLR LLNQVSPIPK FIHFSSNEII LKAFEGKDRV HIIDFDVKQG  360
LQWPSLFQSL ASRPNPPAHV RITGIGESKQ DLIETGDRLT GFAGALNLPF QFHPVVDKLE  420
DVRLWMLHVK ERETVAVNCV FQLHKTLHDG SGVAFRDFLG LIRSTNPVIV LVAEQEAEHN  480
EPFLESRVSY TLKYYSAIFD SIDLCLPRDS TARIKIEENF AREIRNVIAC EGSGRIERHE  540
RFGKWRELME LGGYRCLGID ERELIQTQML LKMHNCENFS VEMQGQDWAG LTLSWLDQPL  600
FTISAWAPVD LGGASSSFSL APR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-6823260811380Protein SCARECROW
5b3h_A5e-6823260810379Protein SCARECROW
5b3h_D5e-6823260810379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022773035.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2R6QNG30.0A0A2R6QNG3_ACTCH; Scarecrow-like protein
STRINGEOY246320.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55682434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein