PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn331571
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 341aa    MW: 38100.6 Da    PI: 5.8944
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn331571genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-18198248255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr ++ +g+++AeIrdp+ +g   r++lg+f+t  eAaka+++a+ k++g
  Achn331571 198 HYRGVRHRP-WGKFAAEIRDPKRRG--SRIWLGTFDTSIEAAKAYDRAAFKMRG 248
                 7*****888.**********96554..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-31197257IPR001471AP2/ERF domain
SMARTSM003801.1E-35198262IPR001471AP2/ERF domain
PfamPF008472.3E-13198248IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22198257IPR016177DNA-binding domain
PROSITE profilePS5103223.644198256IPR001471AP2/ERF domain
CDDcd000186.75E-30198256No hitNo description
PRINTSPR003675.1E-13199210IPR001471AP2/ERF domain
PRINTSPR003675.1E-13238258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MATPDEVSAL ELIRQHLFGE FSPVTDLSHT TSIFTTHDGT VSVTTKNSSS PSDSFCSQTA  60
SSDGHNFNER NDAQIFDCVS NSINFDCNQN DLFEFESKYR IMDFTTPKEL NDTEIFDFVS  120
DSIHFERNQI DMFELEANPV IVDLTTSKSV NSSTPSSFSN RKRSLKIDLA PVKKIEWLNF  180
SEAKVSEEKP SNTEERRHYR GVRHRPWGKF AAEIRDPKRR GSRIWLGTFD TSIEAAKAYD  240
RAAFKMRGSK AILNFPLEAG TLSKTAVASA VICGAKRCRD VELKSEQQAV KKVWLGETDA  300
SVVSSNEMSS PLTPSSWTAA WDFLPLSPHP ILGYAQLMVL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-30197257161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-30197261468ATERF1
3gcc_A9e-30197261468ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00437DAPTransfer from AT4G17490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028127179.11e-102ethylene-responsive transcription factor 5-like
TrEMBLA0A2R6QNS80.0A0A2R6QNS8_ACTCH; Ethylene-responsive transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.12e-51ethylene responsive element binding factor 6