PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn331561
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 517aa    MW: 58618.9 Da    PI: 6.3112
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn331561genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-19371421255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp+ +g   r++lg+f+t  eAaka+++a+ k++g
  Achn331561 371 HYRGVRQRP-WGKFAAEIRDPKRRG--SRVWLGTFDTSIEAAKAYDRAAFKMRG 421
                 7********.**********96554..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.7E-32370430IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22371430IPR016177DNA-binding domain
SMARTSM003804.9E-37371435IPR001471AP2/ERF domain
PROSITE profilePS5103223.828371429IPR001471AP2/ERF domain
CDDcd000182.89E-30371429No hitNo description
PfamPF008472.3E-14371421IPR001471AP2/ERF domain
PRINTSPR003673.5E-13372383IPR001471AP2/ERF domain
PRINTSPR003673.5E-13411431IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MEKNDNGLLN GSNTKGKLFL QQKHLFKNSE KMDGFPFWKK LKLFCENHDI DILDMSGHYT  60
AGRCRSHFQR DPITLEHHFR IDIFLITVDS QLQELNNRFK EDVMELLVLS TSLDPRDSFK  120
SFNIEDICEL ANRFYPMDFT DFLHLSLTEV QNISRLSTHS FENFCGCFIM VTPDEVSALE  180
VIRQHLFGEF SPVAELRHNT SMFTTHDGTV SVTTDNSSSQ SHSFCSQTAS SDGHNFNERN  240
GAEIFDCVSD TINFDCNQND LFEFESKSQI IDLTTPKARN DTENFGCVSD SIHFERNRND  300
MFELEAKPVI VDLMTSKSMN SSTQSSSVSS FRNRKRPLKI DLAPVKKIEW LNFSEPKVSE  360
EKPSNTEEKR HYRGVRQRPW GKFAAEIRDP KRRGSRVWLG TFDTSIEAAK AYDRAAFKMR  420
GSKAILNFPL EAGTLSKTAV ASAVNGGAKR CRDVEVKSEQ KAVNKEWLGE SDASVVSSNE  480
MISPLTPSSW TAAWDFLPLS PLSSHPLLGY AQLMVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-30370430161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028127179.12e-97ethylene-responsive transcription factor 5-like
TrEMBLA0A2R6QNS30.0A0A2R6QNS3_ACTCH; Ethylene-responsive transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.17e-47ethylene responsive element binding factor 6