PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn331531 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 303aa MW: 33440.3 Da PI: 6.5212 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.1e-18 | 99 | 149 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++k +g+W+AeIr+p r r +lg++ taeeAa +++a+ +l+g Achn331531 99 TKYRGVRQRK-WGKWAAEIRHP----LRgVRLWLGTYATAEEAALVYDHAAIQLRG 149 69*******9.**********7....246*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.3E-12 | 99 | 149 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.95E-31 | 99 | 157 | No hit | No description |
PROSITE profile | PS51032 | 23.077 | 100 | 157 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-35 | 100 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-21 | 100 | 157 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-30 | 100 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 101 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 123 | 139 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MLESVKYSEH RERIKMERPS LPKFNAVGPR VVRITVNDGD ATDSSGDEDG LLRRQRVKKF 60 VNEVVIEDGS PPTAKVKRRR KATGKAQNLV SRLKLSSGTK YRGVRQRKWG KWAAEIRHPL 120 RGVRLWLGTY ATAEEAALVY DHAAIQLRGP HAQTNFPKPP AKTTFTGDIS GDESHGHSLS 180 SPKSVLRFQI APNEEVESSP SQPNDAVSQC RDINDATNAS ENSGFSPLES LFNCDAFDFQ 240 NQVPDLFDGS GFGDIIFSQD CVGPFLESGY EFGFGQSIWA TEDCFKFQDI GDIFGSDPPI 300 TI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-19 | 96 | 157 | 1 | 63 | ATERF1 |
3gcc_A | 5e-19 | 96 | 157 | 1 | 63 | ATERF1 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019240845.1 | 2e-86 | PREDICTED: ethylene-responsive transcription factor CRF2 | ||||
TrEMBL | A0A2R6PI44 | 0.0 | A0A2R6PI44_ACTCH; Ethylene-responsive transcription factor | ||||
STRING | XP_009763317.1 | 6e-85 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 2e-56 | cytokinin response factor 2 |