PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn330401
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 365aa    MW: 40801.3 Da    PI: 4.7762
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn330401genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.7e-2094143255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++aa++k++g
  Achn330401  94 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAAARKIRG 143
                 69*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.1E-3994157IPR001471AP2/ERF domain
CDDcd000185.23E-2194153No hitNo description
Gene3DG3DSA:3.30.730.103.7E-3394152IPR001471AP2/ERF domain
PROSITE profilePS5103224.77794151IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-2394152IPR016177DNA-binding domain
PRINTSPR003671.1E-1195106IPR001471AP2/ERF domain
PfamPF008472.0E-1395143IPR001471AP2/ERF domain
PRINTSPR003671.1E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MCGGAIISDI IAPARTRRLT ADFLWPSDVK KNLSNYHSKP LRSEIVVLGD DFEADFQDFK  60
DYSDDEDGDD SRSKKSMESH GQAEKSAKRK KKNQYRGIRQ RPWGKWAAEI RDPRKGVRVW  120
LGTFNTAEEA ARAYDAAARK IRGKKAKVNF PDDAPPNSPK LTVKANTQKL LSMESPSTVQ  180
PSLNQKFNFI NHPDPDNYSM SFVEEKPPTM QYGFTDAYPI SEEVGLKSFT PLDDATLYVN  240
SDQGSNSFDC SDFEWGEYNA KTQEISSLLS ATIKNDEAQF VQGASPTKKL KPNPVDVVPV  300
EENTVKKLSE ELSAFESQMK FFQIPYLEGN WDASVDTFLG GDTAQDGGNS MDLWNFDDMV  360
AGVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2294151260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-2291151263ATERF1
3gcc_A7e-2291151263ATERF1
5wx9_A3e-21931531374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18692AKRKKKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028064263.10.0ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A2R6QF910.0A0A2R6QF91_ACTCH; Ethylene-responsive transcription factor RAP2-12 like
STRINGEOY273691e-158(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-61related to AP2 12