PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn329731

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

GRAS

Protein Properties

Length: 481aa MW: 54268.4 Da PI: 7.1469

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn329731	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	310	5.4e-95	118	479	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 ++L+++Ae + +g+++ a+ +Larl+++ sp ++p+qR a+yf+eAL+ l+ ++ + lpp++ ++ + ++ a+kl+se+sP+++f ++t Nqa Achn329731 118 DQLFKAAELILAGNFSHAHGILARLNHQLSPLAKPFQRTAFYFKEALQLPLLMPCPATL--LPPKSPTPIEAMFKMGAYKLLSELSPLVQFMNFTSNQA 214 68************************************************9676666..8999999999************************ PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak..rledleleeLrvk 197 + ea+ +e+vH+iDfdi+ G+QW++++q+L R+ +g sl+iT+++sp++++ el ++e+L++fA+e+gv fe +++ + + ++ + +r + Achn329731 215 LIEALCDAEQVHVIDFDIGFGAQWASFMQELPGRNnRGCISLKITAFASPSTHHPLELGLMHENLTQFANEIGVGFELEIVNLDvfDPSAYPVALFRSS 313 ******************************966777************************************9544223344456667888 PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 ++Ea++Vn+ + + +s ++++++vk+lsPk+vv e+ +++++ +F +++l+a++yy +l++s++a ++se +k+Er+l++++i++ Achn329731 314 EEEAIVVNFPIWACSSR---LS---VLPSLVRFVKQLSPKIVVSLERGCERSDLPFSHHLLNAVQYYEVLLESIDAA-NANSEITNKIERFLVQPKIES 405 8****99555443...33...3558*****************************************887.6899************* PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +v+ + + + +W++ + +aGF+pvp+s++a++qa ++l++ +++g++ve++++slvl+W++r+L+s+SaWr Achn329731 406 IVSGRFHA----PDPMPHWKALFASAGFSPVPFSNFAETQAGCVLKRSQVRGFHVEKRQKSLVLYWQRRELMSASAWR 479 987666....9****************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.157	90	459	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-92	118	479	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MIYQQQELET LDSKPQIFNP QAFVNQQQQF QVTHNQYFFP SPQQDPLRLL QPHPKRQNLG 60 VSDPFSQTPK PPFFDPGHEL LLLRNQQLGL AQQMRPKQEV VGGDQAAVLH HHQQVVYDQL 120 FKAAELILAG NFSHAHGILA RLNHQLSPLA KPFQRTAFYF KEALQLPLLM PCPATLLPPK 180 SPTPIEAMFK MGAYKLLSEL SPLVQFMNFT SNQALIEALC DAEQVHVIDF DIGFGAQWAS 240 FMQELPGRNN RGCISLKITA FASPSTHHPL ELGLMHENLT QFANEIGVGF ELEIVNLDVF 300 DPSAYPVALF RSSEEEAIVV NFPIWACSSR LSVLPSLVRF VKQLSPKIVV SLERGCERSD 360 LPFSHHLLNA VQYYEVLLES IDAANANSEI TNKIERFLVQ PKIESIVSGR FHAPDPMPHW 420 KALFASAGFS PVPFSNFAET QAGCVLKRSQ VRGFHVEKRQ KSLVLYWQRR ELMSASAWRC 480 *

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MIYQQQELET LDSKPQIFNP QAFVNQQQQF QVTHNQYFFP SPQQDPLRLL QPHPKRQNLG  60
VSDPFSQTPK PPFFDPGHEL LLLRNQQLGL AQQMRPKQEV VGGDQAAVLH HHQQVVYDQL  120
FKAAELILAG NFSHAHGILA RLNHQLSPLA KPFQRTAFYF KEALQLPLLM PCPATLLPPK  180
SPTPIEAMFK MGAYKLLSEL SPLVQFMNFT SNQALIEALC DAEQVHVIDF DIGFGAQWAS  240
FMQELPGRNN RGCISLKITA FASPSTHHPL ELGLMHENLT QFANEIGVGF ELEIVNLDVF  300
DPSAYPVALF RSSEEEAIVV NFPIWACSSR LSVLPSLVRF VKQLSPKIVV SLERGCERSD  360
LPFSHHLLNA VQYYEVLLES IDAANANSEI TNKIERFLVQ PKIESIVSGR FHAPDPMPHW  420
KALFASAGFS PVPFSNFAET QAGCVLKRSQ VRGFHVEKRQ KSLVLYWQRR ELMSASAWRC  480
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-33	135	479	22	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028093152.1	0.0	scarecrow-like protein 6
Swissprot	O81316	1e-113	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A2R6Q818	0.0	A0A2R6Q818_ACTCH; Scarecrow-like protein
STRING	XP_008377890.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6986	19	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-111	GRAS family protein

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]