PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn327901 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 255aa MW: 29293.6 Da PI: 5.4249 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.7 | 5.4e-25 | 78 | 168 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr...traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++ +k r + ++tr gC+a++++ ++ g+w vtk+++eH+H+l+ Achn327901 78 EFYVAYGRHIGFTVRIHHNRRSRVNHQVIGQDFVCSKEGFRAKKYVY-RKD-RllpPPPTTREGCQAMIRLAVRDGGRWAVTKFVKEHSHTLM 168 6******************************************9988.222.2345899********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.4E-22 | 78 | 168 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MENAISNGFD SDESDLDVQA ESDGEHEHIE NEHPDDSEFY VGENDKMIEQ SVGELSSTVE 60 ALEPYVGMEF NSRDEAREFY VAYGRHIGFT VRIHHNRRSR VNHQVIGQDF VCSKEGFRAK 120 KYVYRKDRLL PPPPTTREGC QAMIRLAVRD GGRWAVTKFV KEHSHTLMSP GKVPWRGSAK 180 HLLSEDEKDK RIRELSIELC NERQKCKRRC AVYEEQLNMI LQDLEKHTEH ISCKVSDIVQ 240 SLKAIEEQSD ESDG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028122837.1 | 1e-152 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2R6S0R5 | 0.0 | A0A2R6S0R5_ACTCH; Protein FAR1-RELATED SEQUENCE like | ||||
STRING | evm.model.supercontig_9.294 | 1e-135 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA645 | 8 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 2e-41 | FAR1 family protein |