PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn327891 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 248aa MW: 28705.1 Da PI: 6.1851 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.9 | 1.2e-26 | 74 | 165 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ Y++++GF++r++++++s ++ i+ r+fvCskeg+r+++ + +++ ++r+ tr gC+a+l++ ++ gkw+++ +++eHnHel+p Achn327891 74 EFYEMYGRRLGFTIRNNRTRRSLKDSAIIGREFVCSKEGFRADKCANrESRILQSRPATREGCNAMLRIAAKDGGKWVIYCFVKEHNHELNP 165 6*****************************************9988834555689**********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-23 | 74 | 165 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MASTSGQGFN SNGIYRRWLA ETFDGHETAD DNLSDNPNRS NDIIKQSIEN VHLSLEALEP 60 LVGMEFESAE DAREFYEMYG RRLGFTIRNN RTRRSLKDSA IIGREFVCSK EGFRADKCAN 120 RESRILQSRP ATREGCNAML RIAAKDGGKW VIYCFVKEHN HELNPSKVPP RRSHRIAFCE 180 DEKDLKIREL SSELHRERKR SAAYQEQLQM VLKYVEEHTQ RLSLNVQIVF DKVKELESEE 240 QDDLDFD* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028122838.1 | 1e-151 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2R6S0N5 | 0.0 | A0A2R6S0N5_ACTCH; Protein FAR1-RELATED SEQUENCE like | ||||
STRING | VIT_05s0102g00400.t01 | 1e-142 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21641 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 9e-50 | FAR1 family protein |