PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn327511
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family DBB
Protein Properties Length: 255aa    MW: 26870.4 Da    PI: 6.4847
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn327511genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.97.4e-07447542
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                 C+ +e  e++  C  ++  lC  C ++ H        H++vpl
  Achn327511  4 QCNVCEAAEAKVLCCADDAALCWACDEKVHAAnklagkHQRVPL 47
                7******99*********************66899999999986 PP
2zf-B_box30.66.8e-105390239
    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkgHtv 39
                 ++kC+ ++e    +fC +++ llC++C +++H   t+
  Achn327511 53 PMPKCDICQEAVGYFFCLEDRALLCRKCDVAIHTANTY 90
                689********9*********************66333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.623147IPR000315B-box-type zinc finger
CDDcd000216.82E-9347No hitNo description
PfamPF006432.5E-5447IPR000315B-box-type zinc finger
SMARTSM003361.2E-10447IPR000315B-box-type zinc finger
SuperFamilySSF578452.84E-54593No hitNo description
PROSITE profilePS501199.0585299IPR000315B-box-type zinc finger
SMARTSM003363.3E-165299IPR000315B-box-type zinc finger
PfamPF006431.5E-75386IPR000315B-box-type zinc finger
CDDcd000211.88E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MKIQCNVCEA AEAKVLCCAD DAALCWACDE KVHAANKLAG KHQRVPLSTA SSPMPKCDIC  60
QEAVGYFFCL EDRALLCRKC DVAIHTANTY VSAHRRFLLT GVKVGLEPGE PGGSSSTGKS  120
PPGKKISVME SSSLPKNGTP MSSATQYNKV LPGQVGGAGN FAPTKLPMSG GSAAGSIPQW  180
HFDKYFGLSE FNQTYAYMDN GSSKADSGKH GDSDCSSILR AREEELDADE CLGQVPDACW  240
MVPQVPSPPT ATGL*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027062280.11e-143B-box zinc finger protein 22
SwissprotQ9SYM23e-90BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A2R6QCU61e-149A0A2R6QCU6_ACTCH; B-box zinc finger protein
STRINGXP_009762543.11e-137(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28922346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.14e-74light-regulated zinc finger protein 1