PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn320331 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | HB-other | ||||||||
Protein Properties | Length: 444aa MW: 49863.3 Da PI: 6.4303 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 38.6 | 1.8e-12 | 15 | 53 | 18 | 56 |
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +Fe ++p++++r +L ++lgLt +q+k+WFqN+R+ k Achn320331 15 YFEGYQHPNERQRCQLGRELGLTPTQIKFWFQNKRTVVK 53 7999*******************************8666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0039 | 8 | 59 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.63E-10 | 15 | 54 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-11 | 15 | 49 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.53E-11 | 15 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.519 | 15 | 55 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.2E-10 | 15 | 53 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MLNIALRDLL ADLLYFEGYQ HPNERQRCQL GRELGLTPTQ IKFWFQNKRT VVKKFIFTWY 60 VQAQKERIEG STLREENERF KFENLVMREM LKGELCTPCK DILFSKEERQ WILEQLRMEN 120 AQLHEKYEEL ILGKMGILVS KVPSLPPAPG SSLDAATGSL LGQRIGGLSL DHDLGSRKFI 180 PSTLLYQLKK EQESEKLQMF QTVVNAIDEL TSLMVTETLW IKDPTDGRYI IHRDNYEKTF 240 PRISHLKGSH ARLESSKAEG ILSELNSSGI SVSMFNSMGQ GQPQGLIVNA TISLWLPHPY 300 QVVFDFMRDE KLRYQPLIAC ENNNMLVLQE SCIDPLGAII TYAPITIKCL DMALSGADSS 360 TIPILPSGFI ISSDGHPDTR ARASSSTTRP IAGGSLLTVV YQIPTRNASS SRQVDIELVA 420 SIKELVNSTV QDIWSALHCG GID* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028062463.1 | 7e-75 | homeobox-leucine zipper protein ROC8-like | ||||
TrEMBL | A0A2R6PTX1 | 1e-149 | A0A2R6PTX1_ACTCH; Homeobox-leucine zipper protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 1e-33 | homeodomain GLABROUS 11 |