PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn320031
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 399aa    MW: 43272.4 Da    PI: 7.2031
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn320031genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.25e-125479126
                --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                ++++ C++++rtG C yG++CkF+H+
  Achn320031 54 PGEPDCMYYLRTGLCGYGSKCKFHHP 79
                5789*********************9 PP
2zf-CCCH35.71.4e-1198122327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C f+++tGtCkyG+ Ck++H++
  Achn320031  98 QPDCVFYLKTGTCKYGSACKYHHPR 122
                 689********************96 PP
3zf-CCCH39.87.3e-13143167327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 + +C+f++rtG Ck+G  CkF+H++
  Achn320031 143 ENPCPFYMRTGLCKFGVACKFHHPQ 167
                 679********************97 PP
4zf-CCCH33.56.9e-11297322227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++Cr+f+ tG+CkyG+ Ck++H++
  Achn320031 297 DQPECRHFMSTGICKYGSHCKYHHPR 322
                 689*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.1925381IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-65380IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-95579IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-55881IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-55978IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-695122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.24495123IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-898122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-699123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4101122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6139168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896140168IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10142167IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5142167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4145166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.967295323IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5295322IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-9297322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-7298324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5301323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MPDNHQVQSN GGVSNSSDQS VDNLEEDIMR IEIQTNDNQG SGVVGNCCPY PDRPGEPDCM  60
YYLRTGLCGY GSKCKFHHPT SAGNGGRYSG ELPERVGQPD CVFYLKTGTC KYGSACKYHH  120
PRDKSCGKPA PLNILGLPMR QDENPCPFYM RTGLCKFGVA CKFHHPQPAG AGTAFPIPGP  180
TAHGPSSSSF VPQSGLHFVG VSALSLPRAS YLPSSHVQVP QTYMPVVMSP SQSLAPTHGW  240
NTYLCSNVKQ EYMIPVSSSS VLGSDLVYNF QNQGESGSSG LMPWSPTSNP PLPERPDQPE  300
CRHFMSTGIC KYGSHCKYHH PRERIAQLTS SLGPLGLPLR PRNPPTVPSL ETSPTKPPKV  360
TDWVRKPEAT SNHHQNPDIE TLENPSEQAS SPPNDQSD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028107624.11e-175zinc finger CCCH domain-containing protein 3-like isoform X1
RefseqXP_028107625.11e-176zinc finger CCCH domain-containing protein 3-like isoform X2
RefseqXP_028107626.11e-176zinc finger CCCH domain-containing protein 3-like isoform X2
TrEMBLA0A2R6QTB30.0A0A2R6QTB3_ACTCH; Zinc finger CCCH domain-containing protein isoform 1
STRINGVIT_12s0059g01450.t011e-155(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135711016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.23e-86C3H family protein