PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn318681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 296aa MW: 32903.1 Da PI: 6.805 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.2e-18 | 14 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d++++ G +W++Ia +++ gRt++++k++w+++l Achn318681 14 KGPWTPEEDKRLADYIQRNGHAswralpklaglnRWAAIATHLP-GRTDNEIKNFWNTHL 72 79******************99**********************.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.7 | 9 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.76E-15 | 10 | 82 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-22 | 12 | 73 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.1E-16 | 13 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 14 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-13 | 16 | 72 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 296 aa Download sequence Send to blast |
MGRSPSLDEI GLKKGPWTPE EDKRLADYIQ RNGHASWRAL PKLAGLNRWA AIATHLPGRT 60 DNEIKNFWNT HLRKKLLQMG IDPVTHRPRT DLSILANLPQ LLAAPNFGNS VNLWDRSLRL 120 QTDGTQLAKI QSLHNILQVL SSTPPPTMEV LHLLGSQTLV DHHQIYESLR IMNSQLGGLG 180 NGHINLAPYP TKIQSNFQNL DHVYQPTHEM DHPMGSSKVL NGDNQFGVTP IAGNSLPALV 240 SVNDQMENKI SLADVSNPST TFEALGELLN DEADDYYWRS DIINQATTPS WPISR* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023894664.1 | 1e-102 | transcription factor MYB53 | ||||
TrEMBL | A0A2R6Q9I0 | 0.0 | A0A2R6Q9I0_ACTCH; Transcription factor like | ||||
STRING | EOY10110 | 2e-99 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16770.2 | 7e-51 | myb domain protein 9 |