PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn318101
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 279aa    MW: 31099.6 Da    PI: 5.4752
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn318101genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-1959107355
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+G+r+++ +g+W+AeIrdp++     r+++g+f taeeAa+a+++ ++k++g
  Achn318101  59 YRGIRQRP-WGKWAAEIRDPRK---GVRVWIGTFNTAEEAARAYDREARKIRG 107
                 9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.3E-2258116IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-3158116IPR001471AP2/ERF domain
SMARTSM003808.8E-3858121IPR001471AP2/ERF domain
PROSITE profilePS5103223.35458115IPR001471AP2/ERF domain
CDDcd000184.86E-3259116No hitNo description
PRINTSPR003671.5E-115970IPR001471AP2/ERF domain
PfamPF008472.6E-1259107IPR001471AP2/ERF domain
PRINTSPR003671.5E-118197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MCGGSILDGL IPRNGNHRVS ASQLWPNSPF VTKFKPPQDQ NNGDERVEKK AKRQRKNLYR  60
GIRQRPWGKW AAEIRDPRKG VRVWIGTFNT AEEAARAYDR EARKIRGNKA KVNFPNEDDH  120
SIQFAPQTHH LPTAISHPNG GFSGNLNQFG VYSSNGFNSV PCSDPVSVLH FEEISGSGLE  180
SAYSSIDCKL EVKEEREKQE ERGNRKEAAV MEVEEAAGEE SEVEKLSEEL MAYESVMKFY  240
QIPYLDGQST NAPPAENDVI GCGAVELWSF DDLTPTLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2259115360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14954KAKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8698550.0GQ869855.1 Actinidia deliciosa ethylene response factor 4 (ERF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028069380.12e-94ethylene-responsive transcription factor ERF073-like
RefseqXP_028069381.12e-94ethylene-responsive transcription factor ERF073-like
TrEMBLA0A2R6QUA50.0A0A2R6QUA5_ACTCH; Ethylene-responsive transcription factor RAP2-3 like
STRINGXP_008454315.11e-86(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71182329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.14e-31ethylene-responsive element binding protein