PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn317851

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 775aa MW: 89625.6 Da PI: 7.9058

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn317851	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.4	5e-28	77	164	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e++ ++r+ ++++t+Cka+++vk++kdgkw+++++ +eHnHel p Achn317851 77 SFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDGG---SSRRPTVKKTDCKASMHVKRRKDGKWYIHEFIKEHNHELLP 164 5**************************************999888...77888899****************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-25	77	164	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.1E-28	284	377	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.311	564	600	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.5E-6	574	597	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-6	575	602	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 775 aa Download sequence Send to blast
MHIVRETKVT KCERVCDFVR EKITSSREDM VALVDEANDR DGAIINSPKK DEVGIEGDPD 60 FEPRHGIEFE SHESAYSFYQ EYAKSMGFTT SIKNSRRSKK SKEFIDAKFA CSRYGVTPES 120 DGGSSRRPTV KKTDCKASMH VKRRKDGKWY IHEFIKEHNH ELLPALAYHF RIHRNVKLTE 180 KNNIDILHAV SERTRRMYVE MSRQSGGCQN AGILGDGIIS QFDKGRYLAL EEGDAHVMLD 240 YFMQIRKENP NFFYAMDLNE DQRLRNLFWV DAKSRSDYIS FSDVVFFDTS YLKSSDKMPF 300 APFVGVNHHY QSMLLGCALI ADETKSTLVW IMKTWLRAMG GQAPKVIITD QDKDLKAAIE 360 EVFPNARHCF SLWHVLEKIP EALSHVIRRH ENFIEKFKKC IFKSWTEEQF DMRWWKMVSR 420 FELQEEDWIH SLYEDRKKWV PTYMRDTFLA GMSTPQRAES VNSFFDKYIH KKITLKEFVK 480 QYGTILQNRY EEEAIADFDT WHKQPALRSP SPWEKQMSTV YTHAIFKKFQ VEVLGVVGCH 540 PRKESEDGTT VTFRVDDCEK GTNFMVAWDE TKADVSCSCL LFEYRGYLCR HIMIVLQICG 600 LSIIPSHYIL KRWTKDAKSS QSMVEGTERI QTRVQRYNDL CKQAIELGEE GSLSEANYNI 660 AFRALVEALK NCVNVNNRSA AESSSSALCL RDIEEENQGS LAVKTSKKKT SNKKRKENLN 720 SEGISLNGYY GTQHNVQGLA HLDFSRPQTS FTYGLQDESN LRCSQTHGDA SRHA*

Sequence ? help Back to Top

Protein Sequence Length: 775 aa Download sequence Send to blast

MHIVRETKVT KCERVCDFVR EKITSSREDM VALVDEANDR DGAIINSPKK DEVGIEGDPD  60
FEPRHGIEFE SHESAYSFYQ EYAKSMGFTT SIKNSRRSKK SKEFIDAKFA CSRYGVTPES  120
DGGSSRRPTV KKTDCKASMH VKRRKDGKWY IHEFIKEHNH ELLPALAYHF RIHRNVKLTE  180
KNNIDILHAV SERTRRMYVE MSRQSGGCQN AGILGDGIIS QFDKGRYLAL EEGDAHVMLD  240
YFMQIRKENP NFFYAMDLNE DQRLRNLFWV DAKSRSDYIS FSDVVFFDTS YLKSSDKMPF  300
APFVGVNHHY QSMLLGCALI ADETKSTLVW IMKTWLRAMG GQAPKVIITD QDKDLKAAIE  360
EVFPNARHCF SLWHVLEKIP EALSHVIRRH ENFIEKFKKC IFKSWTEEQF DMRWWKMVSR  420
FELQEEDWIH SLYEDRKKWV PTYMRDTFLA GMSTPQRAES VNSFFDKYIH KKITLKEFVK  480
QYGTILQNRY EEEAIADFDT WHKQPALRSP SPWEKQMSTV YTHAIFKKFQ VEVLGVVGCH  540
PRKESEDGTT VTFRVDDCEK GTNFMVAWDE TKADVSCSCL LFEYRGYLCR HIMIVLQICG  600
LSIIPSHYIL KRWTKDAKSS QSMVEGTERI QTRVQRYNDL CKQAIELGEE GSLSEANYNI  660
AFRALVEALK NCVNVNNRSA AESSSSALCL RDIEEENQGS LAVKTSKKKT SNKKRKENLN  720
SEGISLNGYY GTQHNVQGLA HLDFSRPQTS FTYGLQDESN LRCSQTHGDA SRHA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00434	DAP	Transfer from AT4G15090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028080102.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1
Refseq	XP_028080104.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A2R6QCF1	0.0	A0A2R6QCF1_ACTCH; Protein FAR-RED IMPAIRED RESPONSE like
STRING	VIT_03s0017g01810.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]