PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn317781
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TALE
Protein Properties Length: 265aa    MW: 30428.4 Da    PI: 6.7438
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn317781genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.1e-072132462154
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 k +yp+++++++L +++gL+ +q+ +WF N+R +
  Achn317781 213 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 246
                 469*****************************87 PP
2ELK26.51.4e-09167188122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK +L++++++++ ++++E++
  Achn317781 167 ELKIELKQGFRSRIEDVREEIL 188
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037905.6E-17142IPR005540KNOX1
SMARTSM012555.0E-18143IPR005540KNOX1
SMARTSM012565.7E-2456111IPR005541KNOX2
PfamPF037914.2E-1859110IPR005541KNOX2
PROSITE profilePS512139.184167187IPR005539ELK domain
PROSITE profilePS5007111.677187250IPR001356Homeobox domain
SMARTSM003897.3E-11189254IPR001356Homeobox domain
SuperFamilySSF466892.65E-16189253IPR009057Homeodomain-like
CDDcd000864.25E-11190251No hitNo description
Gene3DG3DSA:1.10.10.602.4E-25194252IPR009057Homeodomain-like
PfamPF059209.0E-18207246IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MKAEIAAHPL YEQLLAAHVA CLRVATPIDQ LPLIESQLSQ SHNLLRAYAS QQHQNNPLSP  60
HERHELDNFL TQYMFVLCSF KEQLQQHVRV HAVEAVMACR EIETNLQDLT GVSLGEGTGA  120
TMSDDEDELQ MDFSLDQTGP EGHDLMGFGP LLPTESERSL MERVRQELKI ELKQGFRSRI  180
EDVREEILRK RRAGKLPGDT TSVLKSWWQQ HAKWPYPTED DKAKLVEETG LQLKQINNWF  240
INQRKRNWHS NSQSVTALKS KRKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A3e-13190246864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243263RKRNWHSNSQSVTALKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
UniProtPossible developmental regulator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding; up to 7-fold increase.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028107303.11e-180homeobox protein HD1-like
SwissprotP466061e-161HD1_BRANA; Homeobox protein HD1
SwissprotQ9FPQ81e-161KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A2R6QNH40.0A0A2R6QNH4_ACTCH; Homeobox protein knotted-1-like
STRINGEOY245901e-178(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67732329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-163KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]
  5. Boivin R,Hamel F,Beauseigle D,Bellemare G
    Stage-specific transcription of the homebox gene Bnhd1 in young tissues and flowers of Brassica napus.
    Biochim. Biophys. Acta, 1994. 1219(1): p. 201-4
    [PMID:7916213]