PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn317221
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 452aa    MW: 50740.1 Da    PI: 5.0481
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn317221genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.7e-17294344155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + y+GVr++  + +Wv+e+r+p   +k++r++lg++ tae+Aa+a++ a+++l+g
  Achn317221 294 PVYRGVRRRN-TDKWVCEVREP---NKKTRIWLGNYPTAEMAARAHDVAMLALKG 344
                 68*****887.9******9998...347************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-12294344IPR001471AP2/ERF domain
PROSITE profilePS5103221.114295352IPR001471AP2/ERF domain
SMARTSM003805.4E-24295358IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-29295354IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-19295354IPR016177DNA-binding domain
PRINTSPR003677.9E-7296307IPR001471AP2/ERF domain
CDDcd000185.11E-26296354No hitNo description
PRINTSPR003677.9E-7318334IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MVEPVGDASQ FVEAEVDDRD WGPKPFKFFN AWLSNSNCIR IMEESWANNS YQGWAAFRIH  60
KKLKNMKASL KIWAKEEFGG LQSKIEIVER DLHDLDIKAE SGILSDADKA KKKDLRILSN  120
KSETLGDVLA RFEDLHGWVF LFRRPLLDRE SEALTELKEV LDGSEVVATS DRQDQLIWQG  180
CSSGVEVTED AKREAENVGF MDKEAIFNMR GFALDMAEQP LHSPLLRLGR SSFYSTGSTP  240
QSENFQLIDL AAEASSSTLS ESDGTHSDES LIVLASSCPK KRAGRKKFRE TRHPVYRGVR  300
RRNTDKWVCE VREPNKKTRI WLGNYPTAEM AARAHDVAML ALKGRSACLN FADSVWRLPM  360
PASTDANNIR LATAAAAEGF RPSQEGGVEV SQDTKRSAEN VCFMDEEVSF DMRGFALDMA  420
ELPLHSPPPR LGWGFSWDDG ESDIEVSLWS F*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6726021e-156KF672602.1 Actinidia chinensis C-repeat binding factor (CBF1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4P1LTT01e-146A0A4P1LTT0_ACTDE; C-repeat binding factor 4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.12e-60C-repeat/DRE binding factor 1