PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn317161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 209aa MW: 22309.2 Da PI: 5.092 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.9 | 8e-16 | 50 | 97 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +++g+Wv+eIr+p++ ++r++lg++ ++e+Aa+a++ a+++l+g Achn317161 50 YRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPSPEMAAAAYDVAALALKG 97 99**6..678*********843...5************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.4E-25 | 49 | 106 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.4E-26 | 49 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.84E-17 | 49 | 106 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.902 | 49 | 105 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-9 | 50 | 97 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.44E-15 | 50 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
MCQQEQSPSQ HSISITTTNI ECENALSPKT GKILPLTAAS STATRKHPMY RGIRSRSGKW 60 VSEIREPRKT TRIWLGTYPS PEMAAAAYDV AALALKGSDV IINFPEKVKS YPVPETKSPA 120 DIRAAAAAAA ALMKAGSSEN PLGNRDSTAG VASAAPGDEF IDEEALFDMP SLLVGMAEGM 180 LMSPPRMHSP RPEDTPENSD GESLWSYD* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010278525.1 | 3e-68 | PREDICTED: ethylene-responsive transcription factor ERF026-like | ||||
Refseq | XP_028107643.1 | 4e-68 | ethylene-responsive transcription factor ERF027-like | ||||
Swissprot | Q9FJ90 | 2e-51 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A2R6QNE7 | 1e-149 | A0A2R6QNE7_ACTCH; Ethylene-responsive transcription factor | ||||
STRING | XP_010278525.1 | 1e-67 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52020.1 | 2e-49 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|