PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn315771 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GRAS | ||||||||
Protein Properties | Length: 421aa MW: 46997.2 Da PI: 6.9417 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 339.9 | 4.4e-104 | 37 | 417 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lLl+c ++vssg+l++a+ +L ++s las +g++mqRla+ f+ ALa rl++ +++lykal+ e + sse +++f +++P+l +++ + Achn315771 37 LIQLLLTCTNHVSSGNLHRADVCLRQISSLASISGNSMQRLATRFASALAVRLVKRWQGLYKALNRAEPE---SSEMDRDQSTFAQAFPYLGLAYAIIT 132 689*************************************************************999998...5666666889**************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +++ + +++e+ +HiiD++ + + W++Ll+ L ++gpp+++iT v++ +k le++g++L k Ae+l++pf+fn+ v rl dl+l++L++++ Achn315771 133 RTLIQTMSEEHIIHIIDLGSGDPKLWIPLLRGLGHLAHGPPHVKITCVNA----NKVVLEKLGKNLFKEAESLDMPFQFNA-VNVRLRDLTLDMLNIRS 226 **************************************************....9**************************.799************** PP GRAS 199 gEalaVnlvlqlhrll...............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.ee 281 gE+la+ ++l+lh ll ++sv+ ++ e+L +v s+sPkvv +veqe+d n +++++rf+e l+yysa+fds++++++ s ee Achn315771 227 GEVLAIASILSLHVLLaeddrvdaqfglnknNNSVKDCKQMVEFLAMVHSVSPKVVLLVEQESDNNLTRLVDRFVEGLHYYSAIFDSIDSTFGGSScEE 325 *****************************8877888888999**************************************************99999** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ri +E++ +g+ei+++ aceg er++rhe+++kW r+ +aGFkpv+l ++ ++ak+l+ ++ +gy v ++++ l+++W++rp++svSaW+ Achn315771 326 RIAIEKM-FGKEIESIMACEGLEREARHERYAKWTVRFARAGFKPVRLWYDSIEEAKRLMVAYGPEGYLVVNQRAGLMICWHGRPIYSVSAWT 417 *******.************************************************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 47.194 | 11 | 397 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-101 | 37 | 417 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MNSSLASTKP DVTLSLTLST SPDALEALNL EEIGIKLIQL LLTCTNHVSS GNLHRADVCL 60 RQISSLASIS GNSMQRLATR FASALAVRLV KRWQGLYKAL NRAEPESSEM DRDQSTFAQA 120 FPYLGLAYAI ITRTLIQTMS EEHIIHIIDL GSGDPKLWIP LLRGLGHLAH GPPHVKITCV 180 NANKVVLEKL GKNLFKEAES LDMPFQFNAV NVRLRDLTLD MLNIRSGEVL AIASILSLHV 240 LLAEDDRVDA QFGLNKNNNS VKDCKQMVEF LAMVHSVSPK VVLLVEQESD NNLTRLVDRF 300 VEGLHYYSAI FDSIDSTFGG SSCEERIAIE KMFGKEIESI MACEGLEREA RHERYAKWTV 360 RFARAGFKPV RLWYDSIEEA KRLMVAYGPE GYLVVNQRAG LMICWHGRPI YSVSAWTCFN 420 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-44 | 31 | 417 | 12 | 378 | Protein SCARECROW |
5b3h_D | 2e-44 | 31 | 417 | 12 | 378 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028085088.1 | 0.0 | scarecrow-like protein 3 | ||||
TrEMBL | A0A2R6RKL5 | 0.0 | A0A2R6RKL5_ACTCH; Scarecrow-like protein | ||||
STRING | EOY03782 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13570 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 1e-106 | scarecrow-like 3 |