PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn315771
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 421aa    MW: 46997.2 Da    PI: 6.9417
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn315771genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS339.94.4e-104374171374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl+c ++vssg+l++a+ +L ++s las +g++mqRla+ f+ ALa rl++ +++lykal+  e +   sse    +++f +++P+l +++ +  
  Achn315771  37 LIQLLLTCTNHVSSGNLHRADVCLRQISSLASISGNSMQRLATRFASALAVRLVKRWQGLYKALNRAEPE---SSEMDRDQSTFAQAFPYLGLAYAIIT 132
                 689*************************************************************999998...5666666889**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 +++ + +++e+ +HiiD++ + +  W++Ll+ L   ++gpp+++iT v++    +k  le++g++L k Ae+l++pf+fn+ v  rl dl+l++L++++
  Achn315771 133 RTLIQTMSEEHIIHIIDLGSGDPKLWIPLLRGLGHLAHGPPHVKITCVNA----NKVVLEKLGKNLFKEAESLDMPFQFNA-VNVRLRDLTLDMLNIRS 226
                 **************************************************....9**************************.799************** PP

        GRAS 199 gEalaVnlvlqlhrll...............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.ee 281
                 gE+la+ ++l+lh ll               ++sv+  ++  e+L +v s+sPkvv +veqe+d n +++++rf+e l+yysa+fds++++++  s ee
  Achn315771 227 GEVLAIASILSLHVLLaeddrvdaqfglnknNNSVKDCKQMVEFLAMVHSVSPKVVLLVEQESDNNLTRLVDRFVEGLHYYSAIFDSIDSTFGGSScEE 325
                 *****************************8877888888999**************************************************99999** PP

        GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ri +E++ +g+ei+++ aceg er++rhe+++kW  r+ +aGFkpv+l ++  ++ak+l+  ++ +gy v ++++ l+++W++rp++svSaW+
  Achn315771 326 RIAIEKM-FGKEIESIMACEGLEREARHERYAKWTVRFARAGFKPVRLWYDSIEEAKRLMVAYGPEGYLVVNQRAGLMICWHGRPIYSVSAWT 417
                 *******.************************************************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.19411397IPR005202Transcription factor GRAS
PfamPF035141.5E-10137417IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MNSSLASTKP DVTLSLTLST SPDALEALNL EEIGIKLIQL LLTCTNHVSS GNLHRADVCL  60
RQISSLASIS GNSMQRLATR FASALAVRLV KRWQGLYKAL NRAEPESSEM DRDQSTFAQA  120
FPYLGLAYAI ITRTLIQTMS EEHIIHIIDL GSGDPKLWIP LLRGLGHLAH GPPHVKITCV  180
NANKVVLEKL GKNLFKEAES LDMPFQFNAV NVRLRDLTLD MLNIRSGEVL AIASILSLHV  240
LLAEDDRVDA QFGLNKNNNS VKDCKQMVEF LAMVHSVSPK VVLLVEQESD NNLTRLVDRF  300
VEGLHYYSAI FDSIDSTFGG SSCEERIAIE KMFGKEIESI MACEGLEREA RHERYAKWTV  360
RFARAGFKPV RLWYDSIEEA KRLMVAYGPE GYLVVNQRAG LMICWHGRPI YSVSAWTCFN  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-443141712378Protein SCARECROW
5b3h_D2e-443141712378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028085088.10.0scarecrow-like protein 3
TrEMBLA0A2R6RKL50.0A0A2R6RKL5_ACTCH; Scarecrow-like protein
STRINGEOY037820.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135701216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-106scarecrow-like 3