PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn315561 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB_related | ||||||||
Protein Properties | Length: 189aa MW: 21421.6 Da PI: 6.3563 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.5 | 4.2e-20 | 16 | 61 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd+ll ++v G g+W+tIar+++ gRt++++k++w+++ Achn315561 16 KGPWTPEEDKLLNEYVSINGEGRWSTIARYLP-GRTDNEIKNYWRTH 61 79******************************.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.339 | 11 | 66 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-22 | 12 | 69 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.6E-18 | 13 | 68 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-17 | 15 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-18 | 16 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.66E-15 | 18 | 62 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MVGMTGWGDV EQGWRKGPWT PEEDKLLNEY VSINGEGRWS TIARYLPGRT DNEIKNYWRT 60 HFKKKAKPSE NQEKRKTQLL VKQKQSQQQV NDTNDPASPN VEVLSNKTTA ETPAKQETVF 120 AQTTIEDHCF PATHQEFAHW LDSSMDDGLW GGLWNLDDSR GRMAVQNQAS GHSCGGNTIN 180 WYNGGYNF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021657306.1 | 3e-51 | transcription factor WER-like | ||||
Refseq | XP_021690918.1 | 3e-51 | transcription factor WER-like | ||||
Refseq | XP_021690919.1 | 3e-51 | transcription factor WER-like | ||||
TrEMBL | A0A2R6PAC0 | 5e-91 | A0A2R6PAC0_ACTCH; Transcription factor like | ||||
STRING | EOY03785 | 3e-45 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 3e-22 | myb domain protein 79 |