PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn314811
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 1030aa    MW: 116855 Da    PI: 7.1086
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn314811genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.59.1e-08230316890
        FAR1   8 kevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                 ++ GF v+++ks    ++ +  + tf C ++g+ ++++++    ++k+ +   ++++gC   lk +k + d+ w+++ l   HnH++a
  Achn314811 230 RRNGFFVVINKSDAG-DSCKRPRITFGCERSGYLRDRRRNkegnSKKQLKMFGTKKCGCPFALKGQKLDtDDDWVLQVLCGVHNHPIA 316
                 788******999887.55558899********99988888444333344445578899998888887778***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498798.23E-1628155IPR008984SMAD/FHA domain
Gene3DG3DSA:2.60.200.201.0E-2156178IPR000253Forkhead-associated (FHA) domain
CDDcd000601.11E-859146No hitNo description
SMARTSM002400.00468129IPR000253Forkhead-associated (FHA) domain
PROSITE profilePS5000610.90869129IPR000253Forkhead-associated (FHA) domain
PfamPF004984.3E-1171146IPR000253Forkhead-associated (FHA) domain
PfamPF031013.2E-6230316IPR004330FAR1 DNA binding domain
PfamPF105515.2E-28430524IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1030 aa     Download sequence    Send to blast
MRDEVTISSH PDDNGAFSPE DFLDSVAASI SSQPLDNSDP AVWGALTAFS DIACKLHQGI  60
NILLTSDEHC IGRLVDDMHF QIESNAVSAN HCRIYRKKGA AEDAESPSTF STFLKDTSTN  120
GTYFNWEKLT TTSPEAKLHH GDIISFAAPP QHELAVAFVF REVSTSDSLN DGALVKRKAD  180
EIVSERKRLK SVGIGAPEGP SLYDFQSPQR SNTIFKSREA LLQWVRDVGR RNGFFVVINK  240
SDAGDSCKRP RITFGCERSG YLRDRRRNKE GNSKKQLKMF GTKKCGCPFA LKGQKLDTDD  300
DWVLQVLCGV HNHPIAEHLV GHSYAGRLSE EETSMLVDMS KSLVRPKEIL VTLKQRDALN  360
ATTMKTIYDA HHRYKFVEKA RRSQMQLLLD QIVQYKYIER HRSCENSEIV TDLFWAHPVG  420
LELLRAFPRV LIMDCTYKTN RYRLPLLEIV GVTSTEMTFS VAFAYIQHEQ EDNYTWALGV  480
LRNLMDECAL PDVIVSEREM DLMNAIDSVF PTARHLLCRW HINKDVMAKC KKSFETEDKW  540
DKFINRWNMV VLSSTEGEYI QQLVTFNKEF STYPEALEYV TSSWLDTYKD RFVAAWTDTS  600
MHCGNATANR AEGSHSQLKR QLGSSQGSFE SSWMKIHNLL ELQHADIKSS FEKSLTIQHN  660
LKPIEFKDLW GRISASALDM LLVEMKRASF VGCDVFACGC VIRRTYGLPC AHEIADYMRD  720
GRSVPLYVIH AHWRKLDLVP TPKSSTIDCQ SELDLIAQHF NVCDSTTKLQ ILKKLRELVT  780
SADCTSLTQQ KVKSKTQGQK NSKIDTSTHR DPSASELVAH GQDSHADVTA AIPEASVKPT  840
WRPKEKVYRT RTLKSILYVD AFPARLRPYF RYVKDVAADG NCGFRVIGGL MGFGEEGWLQ  900
VRKDLLSELH SHEDLYRQLY GTQDRVDGLI HTLSNFECLT FLPLRSEPIP ASSRKEITIG  960
FVNDNHFVEV FLLPGHPIPP IATNWHRYHI PCAEGWDTAY NHRIQHFQDI VGSDVVTRET  1020
VELELKNGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175189KRKADEIVSERKRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028126744.10.0PKS-NRPS hybrid synthetase CHGG_01239-like
TrEMBLA0A2R6QP950.0A0A2R6QP95_ACTCH; PKS-NRPS hybrid synthetase
STRINGXP_008245831.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1053624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-18FAR1-related sequence 5