PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn313511
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 434aa    MW: 49605.9 Da    PI: 4.7933
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn313511genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.72e-1526104280
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                 Wt +e+l+L+     +e + r++ +  ++W+ v++++ ++g++r+ +qC+ kw++l + ykkik++e++ +se +s ++
  Achn313511  26 WTVHETLTLVSEIAAVEGECRKTVSSFQRWKIVAENCNATGVNRTLNQCRRKWDSLLTHYKKIKNWESSSSSELESYWS 104
                 *********************************************************************8777777775 PP
2trihelix48.13.1e-15159237280
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                 Wt +e+l+L+     +e + r++ +  ++W+ v++++  +g++r+ +qC+ kw++l + ykkik++e++ +se +s ++
  Achn313511 159 WTVHETLTLVSEIAAVEGECRKTVSSFQKWKIVAENCNTTGVNRTLNQCRRKWDSLLTHYKKIKNWESSSSSELESYWS 237
                 *********************************************************************8777777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.22284IPR001005SANT/Myb domain
PfamPF138376.7E-1424107No hitNo description
Gene3DG3DSA:1.10.10.603.9E-42687IPR009057Homeodomain-like
PROSITE profilePS500907.2822682IPR017877Myb-like domain
SMARTSM007174.3155217IPR001005SANT/Myb domain
PfamPF138374.4E-14157240No hitNo description
Gene3DG3DSA:1.10.10.604.6E-4159220IPR009057Homeodomain-like
PROSITE profilePS500907.189159215IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MASSEEERGG GGRQSHRTRS QAAPDWTVHE TLTLVSEIAA VEGECRKTVS SFQRWKIVAE  60
NCNATGVNRT LNQCRRKWDS LLTHYKKIKN WESSSSSELE SYWSLDRETR RGLGFPEEFD  120
SDVFKAIDYH LKDEDDGSDT ETDRDNDPEA LADEAAPDWT VHETLTLVSE IAAVEGECRK  180
TVSSFQKWKI VAENCNTTGV NRTLNQCRRK WDSLLTHYKK IKNWESSSSS ELESYWSLDR  240
ETRRGLGFPE EFDSDVFKAI DYHLKDEDDG SDTETDRDND PEALADEVDV LVPVCSGFKK  300
QRRHMMHQKQ DDEERLKPQK CSTNKNVIPE QRSAEEKAKP LKRRKDEKIM LENSSIEAKE  360
QILFAKLQEN AELITSILKG NLDENVDYVL ADLKNVDAPR TAFTRRQGDK IITCLGNLGD  420
KLDQLYDIFQ GCS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338344KPLKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028064427.11e-106trihelix transcription factor ASR3-like
TrEMBLA0A2R6PML70.0A0A2R6PML7_ACTCH; Trihelix transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83602124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.14e-39sequence-specific DNA binding transcription factors