PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn313331
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 321aa    MW: 35726.5 Da    PI: 6.7851
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn313331genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.5e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lvd +++ G g+W++ +++ g++R++k+c++rw +yl
       Achn313331 14 KGPWTPEEDSKLVDFINKNGHGSWTALPKRAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding54.92e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE++++++++  lG++ W++Ia+++  gRt++++k++w++++
       Achn313331  67 RGKFSDEEEQIIINLHSVLGNK-WSKIAAHLS-GRTDNEVKNYWNTHM 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.835961IPR017930Myb domain
SuperFamilySSF466892.07E-3011108IPR009057Homeodomain-like
SMARTSM007171.3E-141363IPR001005SANT/Myb domain
PfamPF002491.7E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-241568IPR009057Homeodomain-like
CDDcd001671.99E-111661No hitNo description
PROSITE profilePS5129427.61462116IPR017930Myb domain
SMARTSM007174.3E-1666114IPR001005SANT/Myb domain
PfamPF002492.0E-1567111IPR001005SANT/Myb domain
CDDcd001675.80E-1269112No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2769117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRSPCCHES GLKKGPWTPE EDSKLVDFIN KNGHGSWTAL PKRAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SDEEEQIIIN LHSVLGNKWS KIAAHLSGRT DNEVKNYWNT HMRKKLIQNG  120
IDPKTHKPLP NLNLLANLSQ LLSPSTFGNL MSPLDNVSQL AKIQLLQTMV QLINPPPLPN  180
VLETSLLGSH NISKFEGIND LPQPQALFDF PNLGVNPHQL LNNFPNVADS VALFEGGFQL  240
PEGFVSLNSD YCGDERENVN ALPALVSACG ESSVNQTEES KKMNPIYDST HYSPTSNMFE  300
ATWEKFLDDE ANAPWKNILA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028077141.11e-119transcription factor MYB41-like
TrEMBLA0A2R6PMI30.0A0A2R6PMI3_ACTCH; Transcription factor like
STRINGEOY251391e-103(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.17e-79myb domain protein 107