PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn312581
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family CPP
Protein Properties Length: 544aa    MW: 58841.1 Da    PI: 7.5388
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn312581genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.91.1e-1488127242
         TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                 ++k+CnCk+skClk+YCeCfa+g +C+  C+C +C+N+ e+
  Achn312581  88 KQKQCNCKHSKCLKLYCECFASGIYCDG-CNCVNCHNNVEN 127
                 89**************************.********9875 PP
2TCR39.61.1e-12172203132
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCk 32 
                 k++kgC+Ckks ClkkYCeCf+a+  Cse+C+
  Achn312581 172 KHNKGCHCKKSGCLKKYCECFQANILCSENCS 203
                 589**************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.3E-1787127IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163431.58988219IPR005172CRC domain
PfamPF036381.1E-1189124IPR005172CRC domain
SMARTSM011145.9E-11172206IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.0E-9175203IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MERGEGGDFP LKKLVRQLDF TAAPAAAALP EHPQPPPPRH QAVPQQQQLL LVPMQSQSPP  60
PSVRPVKPES PKARSRTNVE VKDSTPKKQK QCNCKHSKCL KLYCECFASG IYCDGCNCVN  120
CHNNVENEAA RREAVEATLE RNPNAFRPKI ASSPLGSRDN KEEVGEALLL GKHNKGCHCK  180
KSGCLKKYCE CFQANILCSE NCSEERQALF HTDQANNMAY IQQAANAAIT GAVGSSGYGS  240
PPVSKKRKGQ ELFYGPTSTD QSIHRLAHFQ QANHIKASAH SSSLSSVPVM HAGNAAPLGP  300
SNFTYRSLLA DIIQPQDLKE LCSVLVVFSD EVAKTLADQR NATEMQAEDR GESSAAPSAR  360
DRFQIPKESE TEKAVVDNFS SGNNDEKISP HESNSDGADV SKVRPMSPGT LALMCDEQDA  420
MFMASSSPKG LMGNGCNTSS QLPHGQGASE VYAEQERVVL TKLRDCLNRL ITLGEIKETK  480
CSSLAKTDSG DQKEPLSNGT PNTRAESRNQ QETFSNGVAK ITVPPMTSQT IIAPRTAPQN  540
DLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-24802112132Protein lin-54 homolog
5fd3_B7e-24802112132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4840281e-31AM484028.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X101832.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028068712.10.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2R6R4F60.0A0A2R6R4F6_ACTCH; Protein tesmin/TSO1-like
STRINGXP_006451190.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-150Tesmin/TSO1-like CXC domain-containing protein