PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn312101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | G2-like | ||||||||
Protein Properties | Length: 262aa MW: 29323.1 Da PI: 8.5859 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.8 | 1.8e-31 | 172 | 225 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm+vk L+++hvkSHLQ+YR+ Achn312101 172 PRLRWTPDLHLAFVHAVERLGGQERATPKLVLQLMNVKELSIAHVKSHLQMYRS 225 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07847 | 8.3E-27 | 4 | 96 | IPR012864 | Cysteine oxygenase/2-aminoethanethiol dioxygenase |
SuperFamily | SSF51182 | 2.85E-7 | 5 | 67 | IPR011051 | RmlC-like cupin domain |
PROSITE profile | PS51294 | 11.415 | 168 | 228 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-30 | 168 | 226 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-14 | 170 | 226 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-22 | 172 | 227 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.9E-8 | 173 | 224 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0016702 | Molecular Function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MDTHKSRPAK LVKNAEMRAP CETTVLYPTS GGNIHCFKAV TPCAIFDILS PPYSADDGRD 60 CTYFRRCQRG NLPANLEERQ YVHMMATTTR SAMAETIEVS DEDQTLGSDH SKKCSPFDLN 120 EVAIDGEDNS GTNEDRATLE GDSSSNNTSL EGRERMSGSS SMVRQYLRSK MPRLRWTPDL 180 HLAFVHAVER LGGQERATPK LVLQLMNVKE LSIAHVKSHL QMYRSKKLDG SGQAPRTKRR 240 GMEAKSTVKF EQRLPKWGQN E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-18 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-18 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-18 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-18 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-18 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-18 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-18 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-18 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021823024.1 | 2e-53 | uncharacterized protein LOC110764372 | ||||
TrEMBL | A0A2R6QBY1 | 1e-100 | A0A2R6QBY1_ACTCH; Myb family transcription factor | ||||
STRING | VIT_12s0028g02080.t01 | 8e-54 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5516 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 4e-37 | G2-like family protein |