PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn311471
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 338aa    MW: 38635.6 Da    PI: 7.2099
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn311471genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM138.54.1e-43101352128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 ppG+rF+P+d+el+v+yLkkkv +++l+  + i++v++ +++P++L +++k+ +ek wyfF++rd+ky++g+r+nra+ +gyWkat +dk+++  +g++
  Achn311471  10 PPGYRFQPHDHELIVYYLKKKVLDETLPP-NKIHDVNLSEHNPETLTANFKQhGEKAWYFFTPRDRKYPNGNRPNRAAGDGYWKATSSDKSIMF-NGHV 106
                 9*************************999.77**************9655442778**************************************.999* PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 vg kk+L+f  g+ap+g kt W+m+ey+l
  Achn311471 107 VGYKKSLAFCLGKAPDGIKTPWIMQEYKL 135
                 ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-516162IPR003441NAC domain
PROSITE profilePS5100548.899163IPR003441NAC domain
PfamPF023651.2E-2210135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MNYDYFNSFP PGYRFQPHDH ELIVYYLKKK VLDETLPPNK IHDVNLSEHN PETLTANFKQ  60
HGEKAWYFFT PRDRKYPNGN RPNRAAGDGY WKATSSDKSI MFNGHVVGYK KSLAFCLGKA  120
PDGIKTPWIM QEYKLPADKR QESKRAGKGM KLDNWVLCKI YKHKSKSKDS VVHEVQAQQD  180
EHVPAEMNNV NNQNVPAEMN NVNNQNGEPM PLNPMPNNLH HETNNGYNPM GELKPFPQCF  240
DFMSPYPFHV PLKDDDRLND DSCHINYGNG IMPIQGRPPM NLPFDNSMES NVALNQCPSV  300
KRFKFPTIGE GESFISQLDF MYPLHGDMGS ILPGNEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-49816819173NAC domain-containing protein 19
3swm_B9e-49816819173NAC domain-containing protein 19
3swm_C9e-49816819173NAC domain-containing protein 19
3swm_D9e-49816819173NAC domain-containing protein 19
3swp_A9e-49816819173NAC domain-containing protein 19
3swp_B9e-49816819173NAC domain-containing protein 19
3swp_C9e-49816819173NAC domain-containing protein 19
3swp_D9e-49816819173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:15319476, ECO:0000269|Ref.7}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021654834.18e-66NAC transcription factor 47-like
SwissprotQ93VY33e-52NAC72_ARATH; NAC domain-containing protein 72
TrEMBLA0A2R6R4Z00.0A0A2R6R4Z0_ACTCH; NAC domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14648210
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.22e-51NAC family protein
Publications ? help Back to Top
  1. Zhu X, et al.
    Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes.
    Plant J., 2015. 84(3): p. 597-610
    [PMID:26407000]
  2. Li S, et al.
    The role of ANAC072 in the regulation of chlorophyll degradation during age- and dark-induced leaf senescence.
    Plant Cell Rep., 2016. 35(8): p. 1729-41
    [PMID:27154758]
  3. Ye H, et al.
    RD26 mediates crosstalk between drought and brassinosteroid signalling pathways.
    Nat Commun, 2017. 8: p. 14573
    [PMID:28233777]