PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn311031

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

CO-like

Protein Properties

Length: 394aa MW: 44177.2 Da PI: 4.9474

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn311031	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.9	4.2e-08	17	60	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC+ C + H+ H++v Achn311031 17 ARACDSCIRKRAHWYCPADDAFLCQACDGSVHSAnslanrHERV 60 578*****************************657788888876 PP
2	CCT	21.5	8.3e-09	353	374	1	22
CCT 1 ReaallRYkeKrktRkFeKkir 22 Rea+++RY eKr+tR+F+Kkir Achn311031 353 REARVSRYIEKRRTRLFSKKIR 374 9********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.367	15	62	IPR000315	B-box-type zinc finger
SMART	SM00336	1.7E-9	15	62	IPR000315	B-box-type zinc finger
Pfam	PF00643	5.5E-7	17	60	IPR000315	B-box-type zinc finger
CDD	cd00021	1.92E-8	18	62	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MVVPNKKLAN AVGGRTARAC DSCIRKRAHW YCPADDAFLC QACDGSVHSA NSLANRHERV 60 RLKTSSLKNE SNSENSVPLW VRGFTRKARI PRGHRKPKSK ELTLNSNSLV PELGCGESSN 120 EENEEQLLYR VPVFDSIKLC TSTNEVVPSQ EKDMLQVFGH GESSLGFLPS EMELEEFVAD 180 VESLSGKGLD KESFDMEALG ILECRESDRE EVCLGGGRVK VEDDDEEDKE DYITNHVDAE 240 REPFELNFDY DSPSTCQEEG ESQLGARERI AEEDREGEGG DVKFKKKVLL RLDYKGVITA 300 WADQRSPWTG DRPQVDPSEC WPHCMGSCGT IHHPYGDIMR GIGGHGGMVD SGREARVSRY 360 IEKRRTRLFS KKIRLRGSEI ECGEEAENER EVR*

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MVVPNKKLAN AVGGRTARAC DSCIRKRAHW YCPADDAFLC QACDGSVHSA NSLANRHERV  60
RLKTSSLKNE SNSENSVPLW VRGFTRKARI PRGHRKPKSK ELTLNSNSLV PELGCGESSN  120
EENEEQLLYR VPVFDSIKLC TSTNEVVPSQ EKDMLQVFGH GESSLGFLPS EMELEEFVAD  180
VESLSGKGLD KESFDMEALG ILECRESDRE EVCLGGGRVK VEDDDEEDKE DYITNHVDAE  240
REPFELNFDY DSPSTCQEEG ESQLGARERI AEEDREGEGG DVKFKKKVLL RLDYKGVITA  300
WADQRSPWTG DRPQVDPSEC WPHCMGSCGT IHHPYGDIMR GIGGHGGMVD SGREARVSRY  360
IEKRRTRLFS KKIRLRGSEI ECGEEAENER EVR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028088323.1	1e-144	zinc finger protein CONSTANS-LIKE 16-like
TrEMBL	A0A2R6PBB4	0.0	A0A2R6PBB4_ACTCH; Zinc finger protein like
STRING	VIT_01s0011g03520.t01	1e-137	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1539	24	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	2e-66	B-box type zinc finger protein with CCT domain